Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2251 ATGAACCGTTCAGCCGCCACGTTGTTCATCATCGTCGCTACGTTGTGTTTCGTTTTAGAATTCGAAGCAAAAACAATCGACCCCTATAAGGTTCTTGGGGTTGATAAAACTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCACAAACTCTCTCTTCAATATCACCCTGACAAGAACAAGGCCAAAGGTGCACAAGAGAAGTTTGCTCAGATAAATAATGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGACTTATATGGAGATGAGAAAGGAAATCCTGGATTTGAAGCTGGCCACCCTGGAGGTAGCGGCTTTAACTTCAGACCAGGCGAACAATGGAGTAGCGGTGGCCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGCAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCTGGGCCCAAGAGTTCCCCCAAAAGTTTTAAAGCCATAAATTCAAATATCTACAAGAAAGAAATTGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATACACCCTCATTGAGGGGCGTCCAACAGTTTGAGTCCACTATAGGGGAGGTTTCCAGTACATTGCAAGGAGCTTTGAAGGTTGGAAGCATAAACTGTGAAAAGGAAGTCTCATTATGTAAGGAGCTTGGTATATATCCTCGCAAAGCTCCAAGGATTTTTGTCTATTCTTACAAGGAGAATGAAAAGGGTTCTCTGGTGGAGTACGGTGGTAACTTGGCTGTTAAGGATTTGAAGGCTTTCTGTCAACAACACTTGCCAGGATTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTTAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTCTCTTCCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGTAAACGCATTACTTTCGGTGATGTAGAGGTTCATGATTCTGATTTGAGAGTGGAAAAACTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAGACTATTCTGAAAACAGGGGTTTCTGTGAAAGATGTAAAATCTGGTGTACAAGATCTTAGTAACATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGCACAAACTGATTCAGAAGACGGATACATTCAGTTGCTTTCTCGGTCAAACTTCGAGGATCTCTGTGGGGCAAAAACTCCAGTTTGCATAATTGGTGCCTTTAGATCTTTGAAAGCAAGGGAAGAGCTAGAATATATTCTCTCTTTGGTCTCACATATGTCATTGTCAAGAAAACCAAATGGAGGCGGCAGCTCTAGGGACTCCATTTCCTATGCTCTCTTAGACTCTGCACAGCAACAATCCTTTCTAAACGCATTTGACAAAATGGGTTATAAATCATCAGATAAGTTGTTGATTGCCTACAAACCTCGGAAAGGGAAATTCGCTGTATTTATGGGTGATATGAGAATAGAGAAGGTAGAGAATTTTATCGGCTCCGTTCTAAGCGGAGATATACCCTTTAGGGAAACACATAAGAAGCCTGTACTAAAATAG 1650 0.4091 MNRSAATLFIIVATLCFVLEFEAKTIDPYKVLGVDKTASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGSGFNFRPGEQWSSGGQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSGPKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYTPSLRGVQQFESTIGEVSSTLQGALKVGSINCEKEVSLCKELGIYPRKAPRIFVYSYKENEKGSLVEYGGNLAVKDLKAFCQQHLPGFSKRIDLNQLDQFSTTGKLPRVLLLSSKKNTPVIWRVLSGLYRKRITFGDVEVHDSDLRVEKLGVDALPAIVGWLPNGEKTILKTGVSVKDVKSGVQDLSNILDSFEKVSKKETSSQSKKAQTDSEDGYIQLLSRSNFEDLCGAKTPVCIIGAFRSLKAREELEYILSLVSHMSLSRKPNGGGSSRDSISYALLDSAQQQSFLNAFDKMGYKSSDKLLIAYKPRKGKFAVFMGDMRIEKVENFIGSVLSGDIPFRETHKKPVLK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2251 549 Coils Coil 61 81 - -
Tpr6g2251 549 Gene3D DnaJ domain 24 161 IPR036869 -
Tpr6g2251 549 SUPERFAMILY Chaperone J-domain 24 117 IPR036869 -
Tpr6g2251 549 PANTHER DNAJ PROTEIN ERDJ3A 7 549 - -
Tpr6g2251 549 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Tpr6g2251 549 Pfam DnaJ domain 27 88 IPR001623 -
Tpr6g2251 549 CDD DnaJ 27 80 IPR001623 -
Tpr6g2251 549 PRINTS DnaJ domain signature 29 47 IPR001623 -
Tpr6g2251 549 PRINTS DnaJ domain signature 47 62 IPR001623 -
Tpr6g2251 549 PRINTS DnaJ domain signature 63 83 IPR001623 -
Tpr6g2251 549 PRINTS DnaJ domain signature 83 102 IPR001623 -
Tpr6g2251 549 SMART dnaj_3 26 83 IPR001623 -
Tpr6g2251 549 Coils Coil 547 549 - -
Tpr6g2251 549 SUPERFAMILY Thioredoxin-like 175 285 IPR036249 -
Tpr6g2251 549 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Tpr6g2251 549 PANTHER DNAJ PROTEIN ERDJ3A 7 549 - -
Tpr6g2251 549 Gene3D Glutaredoxin 174 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2251 Tpr-Chr6 24454175 24457828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2251 29 90 C2H2 Transcription Factor Family AT1G74250 42.647 2.71e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2251 - - gmx:100796871 785.793