Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2240 ATGGATATGAGGAAGGAAGAAACATGTGGCTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAAAATGGTTGTGAAATTAGTGAAGCAAATGAAGATGAAGAAAGTAAGCAAAACAATAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAGAAGAAACCATCAGTGAGACCTTATGTTAGATCCAAGTTTCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTGAGTATTGCTCATGTGAAGAGTCATTTGCAGATGTATAGAAGCAAGAAAGTAGTTGACACAAATAAAGTGCTGGGTGATCATAGGCTTCTTGTAGACAATGGAGACAAAAATGTTTATAATCTCACCCAACTTCCTATGCTTCAAGGCTATACTCCAAACCAAACTTCATCAAATAGATGTGGATATGGAGATGATTCTATTGCTATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAGAAGGATTGAGAGAACCAATAATAACAACATCAATAATATGCAAGTTCATAATATTTTTCAAGTGAATTCTTCAAATTTTAGAGAATTATCAACAAGTAAAGTCCATGAACCAAGTGATAATTTCCTCTCATTTTGTGGCAATGAATCTTTTAGATTGAGCAAGAATGATGATCTTCAAGTACAGCCTAGAGAACAAGAGCTAATGCCTAATGATAATCAAGTGGACTTGAAAACATTGAAAAGAAAAGCTTCAAATATGGACCTTGATTTGGATCTATCACTTAAATTAAATTCAAGGATCATTGGTGATGATCATAAGAACCAAGGAATTATAGAGGATCATCATGAAGTTGGAAGCAATTTATCTCTCTCATTGTATTCTCAATCTTCTTATAATCTTTGCAAAAGAAAGAAAGAAGGACAAGATGATTCTAAGGAGCAAGATAAAAGAGTGAATATAGGTTTGGATCTAACCATATGA 1074 0.3371 MDMRKEETCGSICSKTSVSINENGCEISEANEDEESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNKVLGDHRLLVDNGDKNVYNLTQLPMLQGYTPNQTSSNRCGYGDDSIAMYENMVHMSSINESRADFYGRRIERTNNNNINNMQVHNIFQVNSSNFRELSTSKVHEPSDNFLSFCGNESFRLSKNDDLQVQPREQELMPNDNQVDLKTLKRKASNMDLDLDLSLKLNSRIIGDDHKNQGIIEDHHEVGSNLSLSLYSQSSYNLCKRKKEGQDDSKEQDKRVNIGLDLTI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2240 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 357 IPR044848 GO:0003700
Tpr6g2240 357 Gene3D - 70 126 - -
Tpr6g2240 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 126 IPR017930 -
Tpr6g2240 357 Pfam Myb-like DNA-binding domain 72 122 IPR001005 -
Tpr6g2240 357 PANTHER - 10 357 - -
Tpr6g2240 357 MobiDBLite consensus disorder prediction 24 62 - -
Tpr6g2240 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 70 125 IPR006447 GO:0003677
Tpr6g2240 357 SUPERFAMILY Homeodomain-like 70 124 IPR009057 -
Tpr6g2240 357 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2240 Tpr-Chr6 24384083 24386458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2240 61 126 G2-like Transcription Factor Family AT2G42660 78.788 8.99e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g2240 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2240 - - cam:101498576 379.407