Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2218 ATGAAGATTGATACCGTTACTGGAGAAAGGAAATCGCGCAAGAGACGCAGTGGTGGAAGAAGTGATTCAGTGGAAGACACTCTTGAGAAGTGGAAGAACTACAACAAACAGCAACAACAAAAGCTTGGTTGTGGAGATAATGGAGCAGAAAAGATTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGTAAACATGTTGGTGAGAAAGCACATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAGTGCTCGTTTGAATTTTCCTAATGGATCACCATCACCATCATCAAGTGGTGGTTCTGCAGATTCTTTGAACGGCGAGGAGGATCTTGCAAAAGTTGAAGAGTTGGAGGGTAATCTTCATCAGTCTGATGAAGAGAATAAGATTCTTTCTAAGAATTTTGTTGCTGATGATGACTCGGTAGAGGAATCGGAGGAAGTGATGATAGTTGGCACTGCCCAATGTCAAGCTAATAAGAAATGTAAGAAAATGGTTCATCAAGAGTCTTACAAGAATGTTAAGTCTGAAAAATCCGTGGAAAGCGAACGACTAGAGAGTAAATCAGAGAACGTTTTGGAAAGTTCTGGCATAGGTGAGTGCTACCATGTGCAGAAGGAGCCTATAGATTCATCCATAAACTCGGGAGCTGCTTGTAGACCTTCTGATATAGCAGAAAATGGGATTTTGGTGAAGAATGGAGAAACAATAAGAGGATCGGGGGAGGATTTGAAATCCTTTGAGATGAGCTGCAACAATAATTTCTTTGGAAACCTGCACAATATTCTTCCAGATAGCAATCAAAGACCAGATTCTGAGTATTTTAACATAAAAACCGAGGCTTCTCTAGCGAAGAAACATAAGAAGGAAGTAATTGGACATTTCTTAAGCCATGCTCAGTCACAAAATGAGCAAAATAAAAATGGAGGTTTTGGTGAGATGAAAAGTGAGCTTAAGGGATTGGAATTCAAGCTGAGAGGCCAATCTACTGACTGTAAGAGTGATGAAGCACAAATAGTACCTTACATGCAGGGAATTCATCTGTCTGATGGTGGCACTGTTGGAACAATTGAAAGGATATCCCAAGTTGAAGCTTTGAACAACAATACTAATAAAAACACTAAATTAAAAGAGAGAGGAAATAATGGATGTGCACTGCATGGATTAAGTTCAGGGCAAAGTAGGAAGCTGAGTGATCTTTCTCAACAGCTGCAAAGATTGGGTGGTTACTTGCCTGAAAATTGGAATAATATGCAGTTTGCAGATCTTGAAGTTGGTTATGATTATAGTTTCTTAAAACCTGATTATGATTTTGGTTTATTAGAAGAGAAGAAGTTACTAGATATATGTTTTTCACATATAGGATCTTGA 1527 0.3949 MKIDTVTGERKSRKRRSGGRSDSVEDTLEKWKNYNKQQQQKLGCGDNGAEKIHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKAHRLWLGTFSTAHEAALAYDKAAKAMYGPSARLNFPNGSPSPSSSGGSADSLNGEEDLAKVEELEGNLHQSDEENKILSKNFVADDDSVEESEEVMIVGTAQCQANKKCKKMVHQESYKNVKSEKSVESERLESKSENVLESSGIGECYHVQKEPIDSSINSGAACRPSDIAENGILVKNGETIRGSGEDLKSFEMSCNNNFFGNLHNILPDSNQRPDSEYFNIKTEASLAKKHKKEVIGHFLSHAQSQNEQNKNGGFGEMKSELKGLEFKLRGQSTDCKSDEAQIVPYMQGIHLSDGGTVGTIERISQVEALNNNTNKNTKLKERGNNGCALHGLSSGQSRKLSDLSQQLQRLGGYLPENWNNMQFADLEVGYDYSFLKPDYDFGLLEEKKLLDICFSHIGS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2218 508 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Tpr6g2218 508 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Tpr6g2218 508 Coils Coil 166 186 - -
Tpr6g2218 508 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Tpr6g2218 508 SUPERFAMILY DNA-binding domain 77 141 IPR016177 GO:0003677
Tpr6g2218 508 MobiDBLite consensus disorder prediction 1 32 - -
Tpr6g2218 508 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 378 - -
Tpr6g2218 508 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 378 - -
Tpr6g2218 508 MobiDBLite consensus disorder prediction 1 76 - -
Tpr6g2218 508 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Tpr6g2218 508 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Tpr6g2218 508 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Tpr6g2218 508 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2218 Tpr-Chr6 24089250 24091992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2218 13 154 AP2-EREBP Transcription Factor Family AT2G40340 57.343 3.64e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g2218 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2218 - - cam:101505842 697.197