LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g2205	ATGGCAGTCACATTCTATAACCTTAAATCTGAATCTGGTTTGAAGAAGCTCAATGAGTACCTTCTTACACGCAGTTACATCACTGGTTACCAAGCTTCAAAGGATGATATCACTGTCTATTCAGCTTTGCCATCTGTTCCATCAGTTGAATTTGTTAATGTGGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCCGGTGTTTCTGGTGAGGGATCTGGTGTTACCGTGGAATCTTCTCTTGTTGCTGAAGAGGCTGTTGCCACTCCTCCGGCTGCTGACACAAAGGCCACCGAAGCCGAGGATGATGATGATGACGATGTTGATTTGTTTGGTGAAGAGACCGAGGAAGAGAAGAAGGCAGCTGCGGAACGGGCAGCCGCCGTGAAAGCATCTAGCAAAAAGAAAGAGAGTGGAAAATCATCTGTTTTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCAGTGAGATCTGTTAAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGATACGGTATCAAGAAACTGCAAATCATGCTTACTATTGTCGATGATTTGGTTTCTGTTGACAACATGGTTGAGGATTATCTTACCGTTGAGCCCATCAATGAGTATGTTCAGAGTTGTGACATTGTTGCCTTCAATAAAATATAA	696	0.4325	MAVTFYNLKSESGLKKLNEYLLTRSYITGYQASKDDITVYSALPSVPSVEFVNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEEAVATPPAADTKATEAEDDDDDDVDLFGEETEEEKKAAAERAAAVKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI*	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g2205	231	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	231	-	-
	Tpr6g2205	231	SMART	EF1_GNE_2	142	231	IPR014038	GO:0003746\|GO:0006414
	Tpr6g2205	231	Pfam	EF-1 guanine nucleotide exchange domain	144	231	IPR014038	GO:0003746\|GO:0006414
	Tpr6g2205	231	Gene3D	-	135	231	IPR014717	-
	Tpr6g2205	231	CDD	EF1B	145	231	IPR014038	GO:0003746\|GO:0006414
	Tpr6g2205	231	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	106	114	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Tpr6g2205	231	Gene3D	-	3	79	-	-
	Tpr6g2205	231	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	220	231	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Tpr6g2205	231	SUPERFAMILY	eEF-1beta-like	139	231	IPR036219	-
	Tpr6g2205	231	MobiDBLite	consensus disorder prediction	88	108	-	-
	Tpr6g2205	231	SUPERFAMILY	GST C-terminal domain-like	8	67	IPR036282	-
	Tpr6g2205	231	PANTHER	RIPENING REGULATED PROTEIN DDTFR10-LIKE	1	231	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g2205	Tpr-Chr6	23943618	23946122	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g2205	5	231	Eukaryotic Initiation Factors Gene Family	AT2G18110	82.018	7.91e-118	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g2205	K03232		-	nnu:104588784	306.605