Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2188 ATGACCATGGATGAACAACAACATCATCATCATCATCATAGTAACTGGGAAACTTCTGAACTAAATAATAATATTAATAATAATAATAATAATCATAATCATAATCATAGTCTTAATCACCTTGTTGAATTTAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTCTTTCTCAATCACCTTCTTTTCATCTACCTTTTTCATCTACTTTCAGCCCATCTGATTTTTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTTAACTGGAATAAGAACAGTTTAGAGGAAGAAGAGCAACAACAAGGTGATAAGAAAGATGTGAAAAACTACTCTGATTTCTCTTTTCCAACTCAAACAAAGCCTGATTCTGTTCTTCAATCTTCCTCAGACATGTTTCAACTGCAGGAACAAGCTAAGAAACAAAACATATGGAAATTCAATGAACCTACAAACCAAAACGATATTTTATCCGAAAGGACAGTATCGGAATCTGAATTCCAACCAACTCAGAACTTTTCCTCAGAATTGGCACTAATTAAACCAGAAACACATAATAGCTCAGTTAATGGATCTGGTTATTATAATTACAATAACAATAACTACAATAATGCATCGCAATCCGTTCGAGAACAAAGGAGGTCAGAAGATGGGTACAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAGTGCACGCATTTGAATTGCTCAATGAAGAAGAAAGTTGAGAAGGATTTGGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCATCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCATCTTCGTCTTGCACTAACTCTGGAATTTCTGATCAATCGGTGATGGATCATGTTTCCATACAAGAAGATTCTTCAGCTTCCGTGGGAGAGGAAGAGTTTGAGCAAACATCACAGACCAGTTATTCTGGTGGAGGAAATGATGACGCAAATGGACCGGAGGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCCTCGGCTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGTGAAATCGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACTGCCCATGGTTGTACAGTTCGAAAACACGTTGAAAGAGCTGCACATGATATCAAAGCCGTGATCACAACTTACGAAGGGAAACACAACCATGACGTACCAGCTGCGCGCGGTTCTGCAGGTTATAACATGAACAGAAATTCTATGAACAATGCCATCGTACCGGCGCCTATTAGGCCCTCAGCAGTGAATTGCTATTCTAATTCATCAAGTTTCACAAATTCATTTTATAACAAGACCGGGCTGCCTACAAACGGAAATCAAGAATCATTTCGACCGGACATGTTGCAGGGTAATGGAAATTTTGGATATTCATCGGCCAATCATTCACAATACTCAGATGCTGGATACTTAAAGGCCAAGGATGAGAGGAAGGATGATTCATTCCTTCAGTCTTTTCTGTCAAAAGACTTCTAA 1668 0.3789 MTMDEQQHHHHHHSNWETSELNNNINNNNNNHNHNHSLNHLVEFNDVPKFKSVQPPSLPLSQSPSFHLPFSSTFSPSDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLEEEEQQQGDKKDVKNYSDFSFPTQTKPDSVLQSSSDMFQLQEQAKKQNIWKFNEPTNQNDILSERTVSESEFQPTQNFSSELALIKPETHNSSVNGSGYYNYNNNNYNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPSSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANGPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAHGCTVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSAGYNMNRNSMNNAIVPAPIRPSAVNCYSNSSSFTNSFYNKTGLPTNGNQESFRPDMLQGNGNFGYSSANHSQYSDAGYLKAKDERKDDSFLQSFLSKDF* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2188 555 MobiDBLite consensus disorder prediction 287 347 - -
Tpr6g2188 555 ProSiteProfiles WRKY domain profile. 386 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 SUPERFAMILY WRKY DNA-binding domain 383 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 MobiDBLite consensus disorder prediction 284 371 - -
Tpr6g2188 555 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 47 553 - -
Tpr6g2188 555 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 553 IPR044810 GO:0003700
Tpr6g2188 555 SMART WRKY_cls 391 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 MobiDBLite consensus disorder prediction 221 250 - -
Tpr6g2188 555 Gene3D WRKY domain 376 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 Gene3D WRKY domain 217 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 Pfam WRKY DNA -binding domain 392 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g2188 555 SUPERFAMILY WRKY DNA-binding domain 228 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2188 Tpr-Chr6 23812918 23816471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2188 42 551 WRKY Transcription Factor Family AT2G38470 42.883 6.90e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr6g2188 WRKY 3.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2188 K13424 - gmx:100776837 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2188 6 23812918 23816471 Tpr4g0645 4 5995056 5998767 PCT