Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2187 ATGAAAATGTTGTCCACAATGTCAGGCTCAGAATTAGTGAATATTAATATTTTAATTTTGTCATGTTTTTTGGCTTTGAATTGCTTTCTTCAAGAATTTGGATCCAATGGTCAACTCATTCCACAAGATGAAGTAAAATCACTACAAGCAATATCAGATAAACTAAAGAACGTGCAATGGAAAGTCACAGAACGTTCCTGCGTTGATGATGGAGGCTTCAGTAATGACAATCTTAATACTGAGAATGACATCGTCAGGAATGTCTCATGCAATTGCAATTTCCAAAATAACACCGTTTGTCATGTTACTAGCATATTTCTAAAGGGCCAAAATATAGCTGGAGTTATGCCTAGTGAATTTGGAAACCTTACTCAATTGAAAGTACTTGATCTCTCTCGTAACTATCTCAATGGCTCAATTCCGACGACTTTTGCTAGCAATTCTCTAGTTGTTTTGTCACTTTCGGGAAACGGATTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTGTTAGCTTGGAGGATCTGGTCTTGGAAAATAATCAACTAGGTGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAAGACACTGCTTCTTTCTTCAAATAATTTTACAGGGATAATACCAGAATCATTTGGCAAACTAAAGAATCTCACTGATTTTACGATAGATGGAAGCAGTTTATCTGGACAGATACCTAGTTTTATTGGGAACTGGACCAAACTTGACAGATTGAACATGCAGGGAACATCTATGGAAGGTCCTATTCCCTCCACCATATCTGAGTTGAAACTTTTGACGGAGTTGAGAATATCTGATTTGACAGGATCAGCTATGACATTTCCTAATCTAAAGGATTTCAAAAACTTGCAACTCTTGGAATTGAGAAATTGCTTAATCACAGGCCCTATTCCTGATTACATTGGTGAAATGGAAAGTTTAGTTACTTTAGATCTAAGCTTCAATATGTTGACCGGTTCAATCCCAAATTCAATTCAGGGCTTAAAAAACCTTGATTACATGTTTCTGACGAATAACTCTTTAAGTGGACCGATTCAAGACTGGATACTGAACTTCAAAATTAACATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTGGCTGCCAACAGTTGAATCTGAACTTGGCTTCAAGCCAATCGTCTTCATCGGTCACTACACCTTCAACATTTTGTTTGAAGAGGAACCTTCCTTGCGCAGGAAAACCTCAGTATAATTCATTGTTCATAAATTGCGGAGGACCTCAAAAGGATTATGATGGAAATCACTATTTTGGCGATCTGCAAACAGATCGCGTTTCAAATTTTGTTGTTAGAAATGAAGGACAATGGGCTTATAGCAGCACGGGAGTGTATATGGGAATTGTTAACGCAAATTATATGGCATCAAATACATATTCTTTGAATATTAATGGCTCAGAATACTATAATACCGCACGGCTTTCACCTATGTCACTTAAATACTATGGCCTTTGTATGGAGAAGGGAAGTTATAAAGTGAATCTCCATTTTGCTGAGATAATGTTTTCAGACGACAAAACTTTTAGCAGTCTTGGAAGACGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGAAGCTGGTGGAGTTGGAAAGGGCATCACTAAGGAATTTGATGTCGAAGTCAACGACAACACGTTGGAAATTCACTTATACTGGGCAGGGAAAGGAACCAATGCGATTCCTGTCAGAGGTGTATATGGACCTCTTATATCTGCTATCACAGTAACACCAAACTTCAAAAATCATTCAAAAGGGTTGTCTGCTGGAGTTATTGTTGGAATTGTAGCCGCATCATGTATCCTTGTCATATTGATATTGGTTACCCTTTGGAAGATGGGTTTGCTTGGCAGAAAATATGTAAGAGAGAAAGAACTTCTTGATCTCAAAACTGGTTATTTCAGCTTAAGACAAATTAAAATAGCCACTAATGACTTTGACCCTGCAAATAAGATTGGTGAAGGGGGATTTGGACCGGTATACAAGGGTATTCTGTCAGATGATGATGTCATTGCTGTTAAGCAACTCTCCTCCAAATCACATCAAGGGAACCGTGAATTTGTTAATGAAATCGGAATGATATCTGCTTTACAGCATCCAAATCTTGTTAAGCTCTATGGCTGTTGCATTGAAGGAAAGCAGTTGCTGCTGGTATATGAATACATGGAAAATAATTGTCTTGCGCGCGCACTTTTTGGTCGTCCAGAACAGAAGCTGCACTTGGATTGGCCTGCAAGAATGAAGATTTGTCTTGGCATAGCAAAGGGATTAGCATTTCTTCATGAAGAATCAGCGTTGAAAATAGTACACAGGGATATTAAGGCTTCTAATGTATTACTTGACAAGGATTTGAATGCCAAAATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGATGGGAATACCCATATCAGTACACGGATAGCAGGAACAGTTGGATACATGGCTCCAGAATATGCTATGCGAGGTTACTTGACTGATAAGGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCAATACAAATTTTAATCCAATGGAGGAGTTTTCATATCTTCTGGATTGGGCCTGTGATCTTCAAGAGCAAGGAAACATTTTGGAGTTAGTGGATCCAAGTCTTCTTGGCTCAAGGTACTCCACAAAGGAAGCCATGAGAATGCTTAATGTGGCATTCTTATGCACAAACACATCTCCCACTCTTAGGCCATCGATGTCATCGGTAGTGAGCATGCTTGAAGGAAAAACTCCGATCCAAACGACAGTAATCAATCGGAGGGACAGCGGTCAACATGCAAGTCTCAAATCCTCCGAGTTTCTGTCACAAGATAGTCAAACATCAGCAAATGGGCCAAGGGTATACTCCTCCGTATCTCTTCTAAGTGAAGACGATTTTTCTTCAAGCAGTTAA 3009 0.3842 MKMLSTMSGSELVNINILILSCFLALNCFLQEFGSNGQLIPQDEVKSLQAISDKLKNVQWKVTERSCVDDGGFSNDNLNTENDIVRNVSCNCNFQNNTVCHVTSIFLKGQNIAGVMPSEFGNLTQLKVLDLSRNYLNGSIPTTFASNSLVVLSLSGNGLSGPIPTEIGDIVSLEDLVLENNQLGGPLPPSLGNLSKLKTLLLSSNNFTGIIPESFGKLKNLTDFTIDGSSLSGQIPSFIGNWTKLDRLNMQGTSMEGPIPSTISELKLLTELRISDLTGSAMTFPNLKDFKNLQLLELRNCLITGPIPDYIGEMESLVTLDLSFNMLTGSIPNSIQGLKNLDYMFLTNNSLSGPIQDWILNFKINIDLSYNNFTKSSATGCQQLNLNLASSQSSSSVTTPSTFCLKRNLPCAGKPQYNSLFINCGGPQKDYDGNHYFGDLQTDRVSNFVVRNEGQWAYSSTGVYMGIVNANYMASNTYSLNINGSEYYNTARLSPMSLKYYGLCMEKGSYKVNLHFAEIMFSDDKTFSSLGRRIFDVSIQGFKYLKDFNIMEEAGGVGKGITKEFDVEVNDNTLEIHLYWAGKGTNAIPVRGVYGPLISAITVTPNFKNHSKGLSAGVIVGIVAASCILVILILVTLWKMGLLGRKYVREKELLDLKTGYFSLRQIKIATNDFDPANKIGEGGFGPVYKGILSDDDVIAVKQLSSKSHQGNREFVNEIGMISALQHPNLVKLYGCCIEGKQLLLVYEYMENNCLARALFGRPEQKLHLDWPARMKICLGIAKGLAFLHEESALKIVHRDIKASNVLLDKDLNAKISDFGLAKLDEDGNTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNFNPMEEFSYLLDWACDLQEQGNILELVDPSLLGSRYSTKEAMRMLNVAFLCTNTSPTLRPSMSSVVSMLEGKTPIQTTVINRRDSGQHASLKSSEFLSQDSQTSANGPRVYSSVSLLSEDDFSSSS* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2187 1002 SMART LRR_typ_2 314 337 IPR003591 -
Tpr6g2187 1002 SMART LRR_typ_2 123 146 IPR003591 -
Tpr6g2187 1002 SMART LRR_typ_2 194 217 IPR003591 -
Tpr6g2187 1002 CDD STKc_IRAK 679 947 - -
Tpr6g2187 1002 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 222 IPR000225 GO:0005515
Tpr6g2187 1002 Gene3D - 418 607 - -
Tpr6g2187 1002 SMART serkin_6 673 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2187 1002 MobiDBLite consensus disorder prediction 967 986 - -
Tpr6g2187 1002 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Tpr6g2187 1002 SUPERFAMILY L domain-like 99 360 - -
Tpr6g2187 1002 PANTHER - 80 967 - -
Tpr6g2187 1002 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Tpr6g2187 1002 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Tpr6g2187 1002 ProSiteProfiles Protein kinase domain profile. 673 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2187 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Tpr6g2187 1002 Gene3D Phosphorylase Kinase; domain 1 642 748 - -
Tpr6g2187 1002 Pfam Malectin domain 419 601 IPR021720 -
Tpr6g2187 1002 Gene3D Ribonuclease Inhibitor 58 171 IPR032675 -
Tpr6g2187 1002 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Tpr6g2187 1002 SUPERFAMILY Protein kinase-like (PK-like) 658 946 IPR011009 -
Tpr6g2187 1002 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 967 - -
Tpr6g2187 1002 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Tpr6g2187 1002 Pfam Protein tyrosine and serine/threonine kinase 677 944 IPR001245 GO:0004672|GO:0006468
Tpr6g2187 1002 Gene3D Transferase(Phosphotransferase) domain 1 749 966 - -
Tpr6g2187 1002 Gene3D Ribonuclease Inhibitor 280 401 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2187 Tpr-Chr6 23794116 23805452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2187 18 996 Receptor kinase-like Gene Family AT1G53440 59.881 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g2187 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2187 - - gmx:100815226 1429.08