Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2183 ATGAAGATCTCTCAGATCGATGATCCGTATGGTGAGTTTTTAGAACTCATAAAGAATTTCCAAGCGGGAAGAATTGATAGAAGACGTTTCAGAGCAAGAGTGCAGGGATTGTGTAGTGGAAATACAGATTTGATTTTCAGATTCAACACCTTACTGAAAAACAAATATCAAATCAAACTTAAGATCACTGGGGTCAAAAGAAAAAAGGTGAAGAAGAAGAAGGTAGAAGAGAGTCATGAACTTCCTTGGGATATGCTTGATAACATTTGCAAAACACTAGATTTTCACGACCTCTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAAGGCTTTTCATAAAATTTACTGGACAAATTTCATAGCATACCAAGAACCATTACTTCTCCGAAATGTGTATAGTAATCGAGAATTCTCTTCCTTAATAAGCATTCCCGACCAAAAAATTTATTCCTTGAAGAAGATGGAGTGCTTATTCAACTCTATCTATGTTGAGTCTTCTGGCGGATATTTTATCAAGGCGGCGGACAATAATTCATTTAAGATAATCAATCCATTTACAAGAACAAAGAAGGTAATCAATGCCTCCAACTTTCAATTTTACTTTAATGGTTTTTTTAACTATGCATTGCTTGCTCTTAGCAAATGCTCTGAGGATTTTGTTTTGGTGGTTTTATGCATGTGTACTATGAATTTGCGTGTCTATCAATCTAGAAACTGTGGTTGGGTTACTTATTCTTCAGAAATAGGAAATCAAGAGAAAGTTGTTCACTTTGTGGTTTTGCACAATATAATATATGTTGTCACTAACAAGGCCAACATAGGAGTGCTTAGCTTGAATTCTGCAAATATTAAATTTCTAAAACTGAAGAGTACTCCTGATGTAACTAGCAGAAACCTCAAGTTGGTTAATTGTGATGAACAACTTTTACTGGTTGATTTAATGGAAGATAAAATGATTAGGAATGTGTACAAGATAGACTTCTCCACCATGAATTATGTCAAAGTTGAAACTTTGGGCAACATTGCATTATTATATGCTTCAAATGGCTTGAAGAACAATTGTTATGCATTGAGCAACCCGAACAAGTGGGGATATGAGAGAAACTCTGTGTATGTCACCCTCTTTTCATCTACAATATGTAGAGTGTATTCATGGGATGATAAAAAATTGAAAAAATGCATCACGCTTCCAACTCCTGATGAAACAGGTGCCTTCTTGTTTGACTGGTGTTTTAGACATCTACAATACGAGATAGATTATTCTCTAGTTGAGTAA 1275 0.3514 MKISQIDDPYGEFLELIKNFQAGRIDRRRFRARVQGLCSGNTDLIFRFNTLLKNKYQIKLKITGVKRKKVKKKKVEESHELPWDMLDNICKTLDFHDLFQFAGVCKNWKAFHKIYWTNFIAYQEPLLLRNVYSNREFSSLISIPDQKIYSLKKMECLFNSIYVESSGGYFIKAADNNSFKIINPFTRTKKVINASNFQFYFNGFFNYALLALSKCSEDFVLVVLCMCTMNLRVYQSRNCGWVTYSSEIGNQEKVVHFVVLHNIIYVVTNKANIGVLSLNSANIKFLKLKSTPDVTSRNLKLVNCDEQLLLVDLMEDKMIRNVYKIDFSTMNYVKVETLGNIALLYASNGLKNNCYALSNPNKWGYERNSVYVTLFSSTICRVYSWDDKKLKKCITLPTPDETGAFLFDWCFRHLQYEIDYSLVE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2183 424 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 222 403 IPR011044 -
Tpr6g2183 424 Pfam F-box domain 80 109 IPR001810 GO:0005515
Tpr6g2183 424 ProSiteProfiles F-box domain profile. 75 119 IPR001810 GO:0005515
Tpr6g2183 424 PANTHER OS06G0113600 PROTEIN 71 419 - -
Tpr6g2183 424 Gene3D Paired amphipathic helix 2 55 IPR036600 GO:0006355
Tpr6g2183 424 PANTHER OS06G0113600 PROTEIN 71 419 - -
Tpr6g2183 424 SUPERFAMILY F-box domain 80 124 IPR036047 GO:0005515
Tpr6g2183 424 SUPERFAMILY PAH2 domain 8 56 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2183 Tpr-Chr6 23766318 23768183 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr6g2183 PAH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2183 - - cam:101488742 431.795