Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2182 ATGACAAAGCACAACACAACGGCGAGCTTCAAGATGAAGATCTCTCAGATCGATGATCCGTATGGTGAGTTTTTAGAACTCATAAAGAATTTCCAAGCGGGAAGAATTGATAGAAGACGTTTCAGAGCAAGAGTGCAGGGATTGTGTAGTGGAAATACAGATTTGATTTTCAGATTCAACACCTTACTGAAAAACAAATATCAAATCAAACTTAAGATCACTGGGGTCAAACGAAAATATGTGAAGAAGAAGGTAGAAGAAAACCGTGAACTTCCTTGGGATGTTCTTGATAACATTTGCAAAACACTAGATTTTCACGACCTCTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAAGGCTTTTCATAAAATTTACTGGACAAATTTCATAGCATACCAAGAACCATTACTTCTCCGAAATGTGTATAGTAATACGCATCTTCAAGAATTCTTTTCCTTAATAAGCATTCCCAATCAAAAAATTTATTCCTTGAAGAAGATGGAGTGCTTATCCAACTCTATGTATGTCGCGTCTTCTAGCGGATATTTTATCAAGGCGGGATTCAATGATTCATTTCAGATATTCAATCCATTTACAAGAGCAAAGAAGGTAATCAATGCCTCTAACTTTGAAGTTATCTCTAATGCTTTTGCTAGCCATGCATTGCTTGCTCTTAGCAAATGCTCCGAGGATTTTGTTTTGGTGGTTTTATGCATATGCTCTAGGAATTTGCGTGTCTATCAATCTAGAAACTATGGTTGGGTTAGTTATTCTTCAGCAATAGGAAATCAAGAAGAGAAGATTGTTCACTTTGTGGTTTTGCACAGTATAATATACCTTGTCACTAACAAGGCCAACATAGGAGTGCTTAGCTTGAATTCTACAATCATTAAATTTCTAAAACTGAAGAGTACTCCTGATGTAACTAGCATACACCTTAAGCTGGTTAATTGTGATGAACAACTTTTACTGGTTGATTTAATGGAAGATAAAATGATTAGGAATGTGTACAAGATAGACTTCTCCACCATGAATTATGTCAAACTTGAAACTTTGGGGGATATTGCATTATTTTATGCTTGTAATGGTTTGAAGAAAGATTGTTATGCATTGAGCAACCCGAACAAGTGGGGATATGAGAGAAACTCTGTGTATGTCACCCTCTTTTCATCTACAATATGTAGAGTATATTCATGGGATGATAAAAAATTGCAAAAATGCATTATGCTTCCAACTCCCGATGAAACAGGTGTCTTCGTGTTTGACTGGTGTTTTAGACATCTACAATACGAGATAGATTATTCTCTAGTTGAGTAA 1317 0.3599 MTKHNTTASFKMKISQIDDPYGEFLELIKNFQAGRIDRRRFRARVQGLCSGNTDLIFRFNTLLKNKYQIKLKITGVKRKYVKKKVEENRELPWDVLDNICKTLDFHDLFQFAGVCKNWKAFHKIYWTNFIAYQEPLLLRNVYSNTHLQEFFSLISIPNQKIYSLKKMECLSNSMYVASSSGYFIKAGFNDSFQIFNPFTRAKKVINASNFEVISNAFASHALLALSKCSEDFVLVVLCICSRNLRVYQSRNYGWVSYSSAIGNQEEKIVHFVVLHSIIYLVTNKANIGVLSLNSTIIKFLKLKSTPDVTSIHLKLVNCDEQLLLVDLMEDKMIRNVYKIDFSTMNYVKLETLGDIALFYACNGLKKDCYALSNPNKWGYERNSVYVTLFSSTICRVYSWDDKKLQKCIMLPTPDETGVFVFDWCFRHLQYEIDYSLVE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2182 438 Pfam F-box domain 90 119 IPR001810 GO:0005515
Tpr6g2182 438 Gene3D Paired amphipathic helix 7 66 IPR036600 GO:0006355
Tpr6g2182 438 SUPERFAMILY F-box domain 90 137 IPR036047 GO:0005515
Tpr6g2182 438 ProSiteProfiles F-box domain profile. 85 129 IPR001810 GO:0005515
Tpr6g2182 438 SUPERFAMILY PAH2 domain 19 67 IPR036600 GO:0006355
Tpr6g2182 438 PANTHER OS06G0113600 PROTEIN 82 433 - -
Tpr6g2182 438 PANTHER OS06G0113600 PROTEIN 82 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2182 Tpr-Chr6 23750932 23753935 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr6g2182 PAH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2182 - - cam:101488742 439.113