Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2180 ATGACTTCAACTAACAGCATAATCCAAAGCAAAAGCAGCATGATCACTTTGAGAGGGAAATACGCTTATGATGTGTTTGTTAGCTTCAGAGGCGCAGACACTCGCTGCAATGTCACTGATCATCTTTTTGCTGCCTTCAAAAGAAAAGGAATTGTTTCATTTAAGGATGATAAAAATCTCAGGAAAGGTGAATCCATAGCACCTGAGCTCCGTCGTGCAATTGAAGGATCACGGATTTTCATAGTGGTTTTCTCAAAGAACTATGCTTTCTCAACATGGTGCTTGCAAGAACTGGATCAGATCCTTTATTATGCTCTAATATCTGGAAGACGTGTTCTTCCAATTTTCTATGATGTTGATCCATCTGAGGTGAGACATCAAAAAGGAAGATATGCTAAAGCCTTTGAAAAACATGAAGAAAGGCTCAAGCATGACTTAGAGGTGGTAAGAAGATGGAGAACAGCTCTGACACGAGTGGCCAATATCACTGGCTGGGATTTACGCCACAAGCGTCAATATGCTGAGATTGAAAAGATTGCTCAACAGATAAGGGATTCATTTTGTCCCAAGTTTTCAAGCCTTCCAAAAGATATAGTGGGGATGATTTCTCCAATAGAAGAACTAGAAAATCGTTTATTTTTGGATTCGGCTAATGATGTTCAGGTTGTAGGAATTTGCGGGATGAGAGGAATAGGGAAATCAACTCTTGCAGCTGTTTTATATGACAGGATCTTTCATGAATTTGAAGCAAGTTGTGTTATCGAAGATGTAAGCAAAATTTATAGAGTTGATGGTGCAATTGGTGCACAAAAGCAAATTCTACGTCAAACTCTAAAGGAAGAACACCTTCGGGTATGCAATCCTTATGAGGCGACTATTTTGATACGAAGTAGGATGCTTCATCTAAAGGCCCTAGTAATTCTTGATAATGTTGATCAAATTGAACAACTGGAGAAATTAGCCGTGAATCGTGAATGTTTTGCTGCTGGGAGTAGAATCATTATAATTACTAGATATGAGCACATCTTGAAAGAGTATGGAGTGGATGGAGTTTACAAAGTTCCACTCTTGAATCAAATTGACTCTATTCAATTATTATTTTATCAAAAAGCTTTCAGATGTGCTGATATTACTAGTTATTATGAACAATTGGCATGTGACATGCTTCATTATGCAAATGGCCTACCTCTAGCAATTAAAATATTGGGTTCATTTTTGTTTACTCTACATACCTCTGAATGGAGAAATGCATTGGTTAGATTGAGAGAAAGTCCGAACGAAAATATTATAGATGTCTTGCAATCAAAGTATCAATATCCACTACGACCATCCATGTATCACTACAATGGACGCTGTCGTGATCAAACCAAATGTACTACTGTGGAGGTTCACCCTAGGGGTGATAATCATTACATGGAGCAAAGGTACATACAGGGTTATCCTGTGCAACCTTCACGATTGTCCTACGTGAACTCGTCTGAGCCCGAGTCTACTTTGTTCATGTTCAATGATGAGAACGCTAATTCTTGTTCCATCATGTGA 1542 0.3846 MTSTNSIIQSKSSMITLRGKYAYDVFVSFRGADTRCNVTDHLFAAFKRKGIVSFKDDKNLRKGESIAPELRRAIEGSRIFIVVFSKNYAFSTWCLQELDQILYYALISGRRVLPIFYDVDPSEVRHQKGRYAKAFEKHEERLKHDLEVVRRWRTALTRVANITGWDLRHKRQYAEIEKIAQQIRDSFCPKFSSLPKDIVGMISPIEELENRLFLDSANDVQVVGICGMRGIGKSTLAAVLYDRIFHEFEASCVIEDVSKIYRVDGAIGAQKQILRQTLKEEHLRVCNPYEATILIRSRMLHLKALVILDNVDQIEQLEKLAVNRECFAAGSRIIIITRYEHILKEYGVDGVYKVPLLNQIDSIQLLFYQKAFRCADITSYYEQLACDMLHYANGLPLAIKILGSFLFTLHTSEWRNALVRLRESPNENIIDVLQSKYQYPLRPSMYHYNGRCRDQTKCTTVEVHPRGDNHYMEQRYIQGYPVQPSRLSYVNSSEPESTLFMFNDENANSCSIM* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2180 513 Pfam NB-ARC domain 205 427 IPR002182 GO:0043531
Tpr6g2180 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 433 IPR044974 GO:0006952
Tpr6g2180 513 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 165 IPR035897 -
Tpr6g2180 513 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Tpr6g2180 513 Gene3D - 357 439 IPR042197 -
Tpr6g2180 513 Gene3D - 20 187 IPR035897 -
Tpr6g2180 513 Gene3D - 188 349 IPR027417 -
Tpr6g2180 513 Pfam TIR domain 22 183 IPR000157 GO:0007165
Tpr6g2180 513 PRINTS Disease resistance protein signature 222 237 - -
Tpr6g2180 513 PRINTS Disease resistance protein signature 298 312 - -
Tpr6g2180 513 PRINTS Disease resistance protein signature 392 406 - -
Tpr6g2180 513 SMART till_3 22 162 IPR000157 GO:0007165
Tpr6g2180 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 438 IPR027417 -
Tpr6g2180 513 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 23 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2180 Tpr-Chr6 23743471 23745600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2180 23 405 WRKY Transcription Factor Family AT4G12020 26.425 1.00e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2180 - - cam:101512606 650.588