Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2178 ATGGGTGTAATGTCTGAAAAACCCCTTCATGAACTTCCTTTGCACTCTACAGACACCACATTTCCTCCTCCTTCATCTAAGAGGTTGGAAGGAAAAGTTGCAATTGTAACAGGGGGAGCTAGAGGAATTGGAGAAGCAACAGTGAGAATTTTTGTGAAAAATGGTGCAAAAGTAGTAATTGCTGATGTTGAAGATGAACTTGGAACCATGCTTGCAAATTCACTCTCTCCATTAGCTACCTACATCCATTGTGATGTTAGCATTGAAAATGATGTTGAAAATTTAGTCAATTCAACAGTTTCTCGCCACGGAAAACTTGACATCATGTTCAACAATGCTGGTGTTCTTGGAAACCAGTCCAAGAACAAAAGCATTGTGAACTTCGATGTTGAGGAATTCGACCGAGTCATGAGTGTTAATGTTAAAGGAGTAGCTTTAGGGATGAAACATGCTGCAAGAGTTATGATTCCAAGAAGATTTGGTTGCATAATTTCCTCAGCTAGTGTAGCTGGAATTTTAGGAGGACTTGGTCCACATGCTTATACAGCTTCAAAGCATGCTATAGTTGGATTAACAAAAAACACTTCTTGTGAATTAGGGAAATATGGGATTAGGGTTAATTGCATTTCACCATTTGGTGTTGCAACTTCTATGCTTGTGAATGCTTGGAGAAAAGGGGATGATAATGAAGTTGATGATGATAATAATGAAATAAATTTTGGATTGCCTTTAATTGAGGAGGTTGAGAAAATGGAGGAATTTGTTAGAGGGATTGGTAATTTAAGAGGAACAACTTTAAGGGCTCAAGATATTGCTGAGGCTGTTCTTTTTCTTGCTAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGAGTTACTTCCTCAAGAAATTGTATTGGATTGTGA 921 0.3789 MGVMSEKPLHELPLHSTDTTFPPPSSKRLEGKVAIVTGGARGIGEATVRIFVKNGAKVVIADVEDELGTMLANSLSPLATYIHCDVSIENDVENLVNSTVSRHGKLDIMFNNAGVLGNQSKNKSIVNFDVEEFDRVMSVNVKGVALGMKHAARVMIPRRFGCIISSASVAGILGGLGPHAYTASKHAIVGLTKNTSCELGKYGIRVNCISPFGVATSMLVNAWRKGDDNEVDDDNNEINFGLPLIEEVEKMEEFVRGIGNLRGTTLRAQDIAEAVLFLASDESKYVSGHNLVVDGGVTSSRNCIGL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2178 306 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Tpr6g2178 306 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Tpr6g2178 306 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Tpr6g2178 306 CDD secoisolariciresinol-DH_like_SDR_c 28 298 IPR045309 GO:0016616
Tpr6g2178 306 Pfam short chain dehydrogenase 32 222 IPR002347 -
Tpr6g2178 306 MobiDBLite consensus disorder prediction 1 25 - -
Tpr6g2178 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 298 IPR036291 -
Tpr6g2178 306 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 16 306 - -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Tpr6g2178 306 PRINTS Glucose/ribitol dehydrogenase family signature 261 281 IPR002347 -
Tpr6g2178 306 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 16 306 - -
Tpr6g2178 306 Pfam Enoyl-(Acyl carrier protein) reductase 250 298 - -
Tpr6g2178 306 Gene3D - 23 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2178 Tpr-Chr6 23710584 23712009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2178 22 297 Acyl Lipid Metabolism Gene Families AT1G24360 26.241 6.92e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2178 - - gmx:100790562 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1054 4 10222247 10231722 Tpr6g2178 6 23710584 23712009 PCT