Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2167 ATGGCAGATCCTGCTAGTAATGGAGGTCTTGAGAGAGATATTGAACAAGCACTCATTATTTTGAAGAAAGGATCTCAGTTAATAAAGTACAGCCGAAAAGCGAAGCCGAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAGGGAAAGGACTCTAAAACTATCTTTGGTTTCGCGCATTATTCCTGGACAAAGAAGTATTGTCTTTAGAAGATATTTGCAGCCAGAAAAGGATTATCTTTCATTTTCACTTGTTTATAATAACGGAGAACGGACACTTGATTTGATATGCAAGGACAAAGCTGAGGCAGAGGTGTGGTTTGCAGGGCTTAAGGCATTAATTTCCACTGGAAGGAATAATAAGCTAACTGAAAGTGAATTATCATATGATGGTGGTGATTTTATTTCAAATAGTCGCCCTTTCGGTGCAGCATTAGAGTTTACTACAAGCATTAATTCTCGTGGTAGGCTGTCGACTGATTCAAATCCTCGTGAGTTTTCATTGTATCGGACAAACTCAGATGTGGGGTTAGATCGTACAATTATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCTAGTACACCTAGCTGTTCAAGTGTAGGATCAGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGTAGTTTCGCCTGATGGAACTGGCAATCAATTCCCTTCCACGACAGATGTATTGGTTCCTAAGCCTTTAGAGTCGAGTGTTGTTCTTGATGTTCAACAGATTGCGTCCGGTGTGCGTCACATGGCTTTAGTTACCAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGGAATCGATAAAGATTTCGGGCGCCCTCAACTTGTTGAGTTTCTAGCTGTTACTAATGTCGAGATTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCAATTTCGGACGATCTATTCTCATGGGGTGATGGTAAATATAATGTTGGACTTCTCGGACATGGCACCGATGTTAGCCATTGGATACCAAAGAGAATTAGCGGTCCTTTGGAAGGACTTCAAGTTATATCTATTGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAACGGAAAACTTTTCACTTTCGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGAGAGAGTGTTTCATATCCAAAAGAGGTTCAGTTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACCGCAGCTATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCATCTCGAAAGCTCTTCACTTGGGGAGACGGAGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTCTCAACACTCATTGAATATAATTTCCACCAGATTGCATGTGGACACACTATGACTATTGCTCTCACTACTTCTGGACATTTATTTACTATGGGAGGCACTGAACATGGTCAACTAGGAAATTCTTCGTCCGATGGAAAAATACCTATACTAGTACAAGACACATTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCTTTGACTTCAAGGAGTGAATTATTTACTTGGGGTAAAGGTGCAAATGGAAGATTGGGACATGGAGATATAGATAATAGAAAATCACCTACATTGGTTGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGCGGCTCAAGTTTCACGTCTTGCATATGCATTCATAAGTGGGTATCTGGAGTTGACCAATCCGCTTGCACCGGTTGTAGACAACCGTTTGGTTTTACTAGGAAAAGGCATAATTGTTATAATTGCGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAAGTTATGAAAGCTGCATTGGCTCCAACACCAGGAAAGCCTCACCGTGTATGTGATTCTTGCTACGCTAAGCTTAAAGCTGTTGAGGCAAACGCGGCTGCGAATCTTAACAGAAAAATTACTACTACACAACCTCGCAGTTCTATCGATGGAAGGGAAAGATTTGGCCAAGGTGAAATAATTAGGTCCACAAAAATTCTTTTTCCGCCTTTCTCAAGCTCAGAACCACTAAAATATCTTGAGATGAGGACTAATATGCTCGGAAATCCTTCCATGCTATCACCTTCTCAAATTCCATCACTCACACAAATGAAAGACATGTCATTTCCAAGTTCAACAACTCCCATTCAAAATGGTATGAGGCTTAATATAGCTCCATCTCCACCAGCAACTCCACCTCTTAGTTCAAGATCAGTATCCCCGTATGCGAGAAGGCCAAGTCCGCCACGTTCTTCCAATCCGGGATTTTCAAGAAGTCTTATCGATAGCTTGAAGAAGACAAATGAGCTTTTGAACCAAGAAGTCTCAAAATTGCAGAACCAAAATCGAAGTTTGAAGCAAAAAAGTATCATGGAAATTCAAAAGCTACAGAAAAACATTAAGGATATCACCTCATTGGCTGAAGAAGAATCTTCTAAACATAAAGCAGCCAAAGAAAATCTCGAGTCCATCATAGTTCAGATCAAGGAAATGGCTGAGCAATTTCCACCAGAAGTTTTAGAGAGTGAAAAATTTAAAAACATGCTTATTCAAGCTGAAAATTTTCTAAATGGAAATTCAAAATCGGAAACAGAAGAAACATCTTCTGTCGTACCATCAAATTTGGACTCTGAGCAACAAAGTGAACCTGTTTCAAACAATGGTTCACATAAACAGAAAGAACGAATAGAAGAAAATAATGAAGCTGCAGAAGTTAATCCATCTCAGGATGCTGGAAATGTCTTTCAAGAAAGCAATGGAGCATCTTCGTCTAATACTGAATCAACAACGGCACCATCACAAAGCTCTGAAAATAATTCAAAATCATTGAACCCTTCAAGATCAATGAACGAAGGAGAAAATCAAATCATTGAACAATTCGAACCAGGCGTTTATGTGACACTAATAGTAAAGCCTAATGGTAACAAAATTTTCAAACGTGTTAGATTCAGTAAAAGAAGGTTTCATGAACATCAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGCTTCGGAGATATAGTCCGCAAGCAAAAAATCTTCAAGGTGTAGCGGCGTCATCTAGTAGTACTCCTCCACCACCTGCTGGAGAAAACATTAATCCTGAAGGTGTGGCGTCATCTAGTAGTACTCCTCCACCACCTACTGAAGAAAACATTGAGGCAACACCTTCTTAA 3327 0.3992 MADPASNGGLERDIEQALIILKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISHKRERTLKLSLVSRIIPGQRSIVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRNNKLTESELSYDGGDFISNSRPFGAALEFTTSINSRGRLSTDSNPREFSLYRTNSDVGLDRTIMQGRTSIGDGFRVSVSSTPSCSSVGSGPDDIESLGDVYIWGEVWADVVSPDGTGNQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVEIVACGENHTCAVSISDDLFSWGDGKYNVGLLGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEHGQLGNSSSDGKIPILVQDTLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGHGDIDNRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYAKLKAVEANAAANLNRKITTTQPRSSIDGRERFGQGEIIRSTKILFPPFSSSEPLKYLEMRTNMLGNPSMLSPSQIPSLTQMKDMSFPSSTTPIQNGMRLNIAPSPPATPPLSSRSVSPYARRPSPPRSSNPGFSRSLIDSLKKTNELLNQEVSKLQNQNRSLKQKSIMEIQKLQKNIKDITSLAEEESSKHKAAKENLESIIVQIKEMAEQFPPEVLESEKFKNMLIQAENFLNGNSKSETEETSSVVPSNLDSEQQSEPVSNNGSHKQKERIEENNEAAEVNPSQDAGNVFQESNGASSSNTESTTAPSQSSENNSKSLNPSRSMNEGENQIIEQFEPGVYVTLIVKPNGNKIFKRVRFSKRRFHEHQAEEWWNTNKDRVLRRYSPQAKNLQGVAASSSSTPPPPAGENINPEGVASSSSTPPPPTEENIEATPS* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 777 806 - -
Tpr6g2167 1108 SUPERFAMILY FYVE/PHD zinc finger 609 678 IPR011011 -
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Tpr6g2167 1108 ProSiteProfiles BRX domain profile. 1003 1058 IPR013591 -
Tpr6g2167 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Tpr6g2167 1108 SUPERFAMILY PH domain-like 13 123 - -
Tpr6g2167 1108 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 951 999 - -
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 337 386 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Tpr6g2167 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 455 501 IPR000408 -
Tpr6g2167 1108 Coils Coil 842 883 - -
Tpr6g2167 1108 CDD PH_PLC_plant-like 12 124 - -
Tpr6g2167 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1003 1057 IPR013591 -
Tpr6g2167 1108 SMART fyve_4 607 676 IPR000306 GO:0046872
Tpr6g2167 1108 SUPERFAMILY RCC1/BLIP-II 224 610 IPR009091 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Tpr6g2167 1108 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Tpr6g2167 1108 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1065 - -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 1062 1108 - -
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Tpr6g2167 1108 CDD FYVE_like_SF 618 671 - -
Tpr6g2167 1108 Coils Coil 935 955 - -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 906 936 - -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 1063 1077 - -
Tpr6g2167 1108 Pfam Transcription factor BRX N-terminal domain 858 894 IPR027988 -
Tpr6g2167 1108 Gene3D - 450 620 IPR009091 -
Tpr6g2167 1108 Gene3D - 218 449 IPR009091 -
Tpr6g2167 1108 Gene3D - 11 131 IPR011993 -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 1085 1108 - -
Tpr6g2167 1108 Coils Coil 810 837 - -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 785 806 - -
Tpr6g2167 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 681 IPR013083 -
Tpr6g2167 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Tpr6g2167 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Tpr6g2167 1108 MobiDBLite consensus disorder prediction 906 999 - -
Tpr6g2167 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1065 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2167 Tpr-Chr6 23486753 23492240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2167 999 1073 Major Intrinsic Protein MIP AT1G31880 34.667 4.48e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2167 - - gmx:100779684 1539.24