LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g2148	ATGAGTTTCAGAAACAGGAACATTGAAGTGGAAGAGAGGGAATGTGAAAAATCAGTGTTGGGGACAAATGGGTCATTAACAAGTACTACACAGTTTACAATTGATGAGAATCTTCTAGTTGACCCTAAATTGCTCTTTATTGGTTCCAAAATTGGTGAAGGAGCTCATGGAAAAGTTTATCAAGGAAGATATGTAGATCAAATTGTTGCTATCAAAGTTCTGCAGCGTGGGAGCACCTCAGAAGAAAGAGCTTCGCTTGAAAATCGTTTTGCACGGGAAGTTAATATGATGTCTCGTGTCCACCATGACAATCTTGTAAAGTTTATCGGAGCATGTAAGGATCCTCTAATGGTGATAGTTACAGAGCTATTACCTGGGATGTCACTGCGAAAATACTTGACGAGTATCCGTCCTAATCCATTAGACATTCACGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCGATGGATTGGCTTCATGCTAACGGGATCATCCATAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCGGTGACCGAAATGATGACTGCAGAAACAGGAACATACCGATGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGTCAAGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTCGGAATTGTTTTGTGGGAGCTACTAACAAATCGGATGCCTTTTGAAGGAATGTCTAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGCAAGAGAGGCCAAAAATTCCAGATGATATATCACCTGATCTTGCTTTTATCATACAATCATGCTGGGTTGAAGATCCAAACATGAGACCAAGCTTTAGTCAGATCATCCGAATGCTCAACGCGTTTCTCTTCACACTCTCACCAGTATCTCCTCCCTTGCCAGAACCCGACAATGAGCCTGAGGCGGCAACAACGAGTAATGGGACCATTACCGAGTTTTCTGCCCGGAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTGTTTACTTCAAAAAGGATAAAAAACTAA	1089	0.4151	MSFRNRNIEVEERECEKSVLGTNGSLTSTTQFTIDENLLVDPKLLFIGSKIGEGAHGKVYQGRYVDQIVAIKVLQRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPNPLDIHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKIPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNAFLFTLSPVSPPLPEPDNEPEAATTSNGTITEFSARNKGKFAFLRQLFTSKRIKN*	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g2148	362	ProSiteProfiles	Protein kinase domain profile.	45	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g2148	362	Pfam	Protein tyrosine and serine/threonine kinase	47	306	IPR001245	GO:0004672\|GO:0006468
	Tpr6g2148	362	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	165	177	IPR008271	GO:0004672\|GO:0006468
	Tpr6g2148	362	CDD	STKc_MAP3K-like	51	306	-	-
	Tpr6g2148	362	Gene3D	Phosphorylase Kinase; domain 1	33	124	-	-
	Tpr6g2148	362	PRINTS	Tyrosine kinase catalytic domain signature	121	134	IPR001245	GO:0004672\|GO:0006468
	Tpr6g2148	362	PRINTS	Tyrosine kinase catalytic domain signature	159	177	IPR001245	GO:0004672\|GO:0006468
	Tpr6g2148	362	PRINTS	Tyrosine kinase catalytic domain signature	233	255	IPR001245	GO:0004672\|GO:0006468
	Tpr6g2148	362	PRINTS	Tyrosine kinase catalytic domain signature	277	299	IPR001245	GO:0004672\|GO:0006468
	Tpr6g2148	362	PANTHER	SERINE/THREONINE-PROTEIN KINASE HT1-LIKE	5	337	-	-
	Tpr6g2148	362	PANTHER	SERINE-THREONINE PROTEIN KINASE	5	337	-	-
	Tpr6g2148	362	ProSitePatterns	Protein kinases ATP-binding region signature.	51	72	IPR017441	GO:0005524
	Tpr6g2148	362	SMART	serkin_6	45	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g2148	362	Gene3D	Transferase(Phosphotransferase) domain 1	127	317	-	-
	Tpr6g2148	362	SUPERFAMILY	Protein kinase-like (PK-like)	42	328	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g2148	Tpr-Chr6	23204575	23208804	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g2148	33	359	MAP Kinase Kinase Kinase	AT5G01850	75.783	0.0	517

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Tpr6g2148		PK_Tyr_Ser-Thr	5e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g2148	-		-	qsu:111990547	598.586