Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2139 ATGAAACGCCGTTTTCTCGAAACAGAGATGAGTATGCCACCATCATACAACAACAACAACAACACAAACGATTCATTCATCAACGTCGAAAACTTCGACACAAACATGGTGATTATATTAGCAGCACTCTTATGCGCATTGATATGCGCTCTAGGATTAAACACCATAGCCCGTTGCGCGATGCGATGCAACAGAGGATTCTCCGAAGAGACACCGGAACAAGCAACAGCAAGGTTGAACAAAACAGGGCTGAAAAAGCATGAACTGAGTGAAATTCCGGTAACAGTTTACCATACCAGAGAGAATATTCCGGCAACAGAGTGTCCCATTTGTTTAGGAGAGTTTGAGAATGGAGACAGAATTCGAATGTTGCCAAAATGTAATCACGAGTTTCATGTTATGTGTATTGACACGTGGTTGGTGTCACATTCTTCATGTCCCAATTGTCGAAATTCACTTCTTGTTGAGAGAGAATCCAATGTTGTTTGTTCTGATGATGGTGTTGTCGGAGATGGGTTGCCGGAAAATGTTGCGGCGGTGATTGTTGAAGTGGAAGCAAGTTGA 564 0.4273 MKRRFLETEMSMPPSYNNNNNTNDSFINVENFDTNMVIILAALLCALICALGLNTIARCAMRCNRGFSEETPEQATARLNKTGLKKHELSEIPVTVYHTRENIPATECPICLGEFENGDRIRMLPKCNHEFHVMCIDTWLVSHSSCPNCRNSLLVERESNVVCSDDGVVGDGLPENVAAVIVEVEAS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2139 187 SMART ring_2 108 149 IPR001841 -
Tpr6g2139 187 CDD RING-H2_EL5_like 107 150 - -
Tpr6g2139 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 154 IPR013083 -
Tpr6g2139 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 160 - -
Tpr6g2139 187 SUPERFAMILY RING/U-box 88 155 - -
Tpr6g2139 187 PANTHER RING-H2 FINGER PROTEIN ATL74 1 160 - -
Tpr6g2139 187 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Tpr6g2139 187 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2139 Tpr-Chr6 23106761 23108401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2139 1 164 C3H Transcription Factor Family AT3G10910 51.445 4.22e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2139 K19040 - gmx:100810195 216.468