Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2109 ATGATGCCACGAACACAATCCTACTTTGCTACTATACAAATTTTCTTACTACTACTTGTGTTTCCTCAAACTAAATCTGATCTAAATTCAGAAAAGCAAGCACTACTTGATTTTGTTGCTGCATTACATCATGGTGAAAAAGTCAATTGGAGTTCCAATACTTCAATATGCACTTCTTGGGTGGGAGTTAAATGCAATCCTAAGGGCTCTCATGTTCATTCCGTGAGGCTTCCGGGTGTTGGATTGCGCGGTTCTCTCCCGGAAAACACCCTCGGTAAGCTACATGGTTTAATCAGTCTCAGTCTTAGGTCTAACAGCTTGAGTGGAAACCTTCCTAGTGACATATTTTCAATTCCTTCTCTAAGATTTATATATCTTCAACATAACAATTTTTCAGGTCATATTTCTGATTATTTGCCACCCCATCTTATGTTTCTTGATTTGTCCTATAACTCTTTCACCGGACAAATTCCGAGTATAATCCAAAACTTGACATATCTAATAGGACTAAACCTTCGAAATAACTCTCTTATAGGACCTATTCCTAATGTTGTTAACCTTCCTAATCTTAAGATTTTGGATTTGAGCTTCAATGACTTGAATGGTTCAATCCCCTCAGTGCTTCATAAGTTTCATGCATCATCATTTAAGGGGAATTTTGGATTATGTGGTGCATCTTTGAAACAATGTTCTTTAGGTTCTTCCCCTAGTGATATTTCAAACAAGAAGCTAAGTACATGGGGGAAAATTGCTATTGCTTTAGGAGTTTTTGCAGCAATGCTTCTACCAGCTCTTGTAGTAGTGTTCTGCTGTTTGAAGAAAAAAATTGGTGAACAAAATGTAGCAACTAAAGAGAAGAGTGAGAAGCTTATGGAGGGATTTGGAAGTGGTTTGCAAGAAAATGAGAGAAACAGGCTAATATTTTTTGAAGGCTGTTCTTATAATTTTGATCTTGATGATTTATTAAGAGCTTCAGCTGAAGTGCTTGGTAAGGGAAGTTGTGGAACAACTTACAAAGCTATTTTGGAAGAAGGGACAATGTTGGTTGTGAAGAGGTTAAAAGAAGTGGCAGTGGTGAAAAAAGAATTTGAACAGCAAATGGAGATTGTTCAAAGACTTGATCATCATCCAAATGTGGTTTCACCTTTTGCTTACTATTATTCAAAGGATGAAAAATTGGTTGTTTATGATTACTTCACATCTGGCAGCTTTTCCAAGTTATTGCATGGAACAGGTGAAACTGCACGAACTCAACTAGATTGGGATTCAAGATTGAAGATCGTGGCTGGCGCTGCTAAGGGCATTGCCCATATCCATTCAGCAAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCCAATGTGCTAATCTCAGCAGATCTTCAAGGCTGCATATCAGATTTTGGCCTAACACCTCTAACAAGTTTATGTGTCTCTCCTAGAAGTCCTCCAGGGTACCGAGCACCAGAGATGAACGAAAGCAGAAAATCCACTCAAAAGTCCGATGTATACAGCTTTGGTATTCTTCTTCTTGAGATGCTGACAGGGAAAACACCAGTTCAATATTCAGGTCATGAAGATGTGTTTGATCTTCCAAAATGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATGTTGAGCTAATGAGATATTCAAACATTGAAGAAGAACTTGTGCAGATGTTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGATACAAGACCTTCAATGGAAGAAGTTGTTGGGATGATTGAAGACATCAGAGGATCCATTTATTAG 1800 0.3839 MMPRTQSYFATIQIFLLLLVFPQTKSDLNSEKQALLDFVAALHHGEKVNWSSNTSICTSWVGVKCNPKGSHVHSVRLPGVGLRGSLPENTLGKLHGLISLSLRSNSLSGNLPSDIFSIPSLRFIYLQHNNFSGHISDYLPPHLMFLDLSYNSFTGQIPSIIQNLTYLIGLNLRNNSLIGPIPNVVNLPNLKILDLSFNDLNGSIPSVLHKFHASSFKGNFGLCGASLKQCSLGSSPSDISNKKLSTWGKIAIALGVFAAMLLPALVVVFCCLKKKIGEQNVATKEKSEKLMEGFGSGLQENERNRLIFFEGCSYNFDLDDLLRASAEVLGKGSCGTTYKAILEEGTMLVVKRLKEVAVVKKEFEQQMEIVQRLDHHPNVVSPFAYYYSKDEKLVVYDYFTSGSFSKLLHGTGETARTQLDWDSRLKIVAGAAKGIAHIHSANGRKLVHGNIKSSNVLISADLQGCISDFGLTPLTSLCVSPRSPPGYRAPEMNESRKSTQKSDVYSFGILLLEMLTGKTPVQYSGHEDVFDLPKWVQSVVREEWTAEVFDVELMRYSNIEEELVQMLQLAMACVAVMPDTRPSMEEVVGMIEDIRGSIY* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2109 599 Gene3D Ribonuclease Inhibitor 140 232 IPR032675 -
Tpr6g2109 599 SUPERFAMILY L domain-like 48 211 - -
Tpr6g2109 599 Gene3D Phosphorylase Kinase; domain 1 291 398 - -
Tpr6g2109 599 SUPERFAMILY Protein kinase-like (PK-like) 327 591 IPR011009 -
Tpr6g2109 599 Gene3D Transferase(Phosphotransferase) domain 1 400 598 - -
Tpr6g2109 599 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Tpr6g2109 599 PRINTS Leucine-rich repeat signature 143 156 - -
Tpr6g2109 599 PRINTS Leucine-rich repeat signature 187 200 - -
Tpr6g2109 599 PANTHER OS05G0480400 PROTEIN 12 596 - -
Tpr6g2109 599 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Tpr6g2109 599 PANTHER OS05G0588300 PROTEIN 12 596 - -
Tpr6g2109 599 ProSiteProfiles Protein kinase domain profile. 323 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2109 599 Pfam Protein kinase domain 326 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2109 Tpr-Chr6 22819710 22822247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2109 26 597 Receptor kinase-like Gene Family AT5G58300 58.037 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tpr6g2109 Pkinase 2.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2109 - - gmx:100810832 916.761