Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2095 ATGGAAGGGAACGGGGCATCATCGGCATCTTCTTCATCTTCCAATTCGAGAAGATATGGATTCCCGTCGGCAGCCAGCATAATTCAAGCACCGTTATCGGCGCTCCTGGAATACTCTGGTATGCTTCCCTCCAGGTCGAATCAGCATCAGCATCAGCATCAACCTAACCCTGATTCTGTTCCCAACAATGACGAGGTTTCGATTAGGATCATCGGTTCTACTGAGCAAGATAATCATAGGGAAGAAGACGCAATACCGTTGGTGGTTAATGATGGGGCTACGACAGCTGGGATGACGTCTTCCCCTTCACATGAGGATGTTGAGCGGACGGGGGGTGGAAATGTGGATGCAGAAGAGGGTGGTGGTGGTGGTGATGGTGCCAATGGGAGAGATTCTTCTTATCAGAGATATGATATTCAACATGCTGCTAGATGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTTGTCTTCATTCGCCAGCATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCTTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAGGAGATACCACCTTTCTGGCATGCTATTTTTATCATCATGGTGAATGATACTTTGGCGCGCCAGGCTGCAATGGTATTGAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGTTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCATTGCAGCCGGTGATCTTTGTGCGATTTGTCAAGAGAAGATGCATGCTCCAATCTTACTTCGCTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA 1287 0.4437 MEGNGASSASSSSSNSRRYGFPSAASIIQAPLSALLEYSGMLPSRSNQHQHQHQPNPDSVPNNDEVSIRIIGSTEQDNHREEDAIPLVVNDGATTAGMTSSPSHEDVERTGGGNVDAEEGGGGGDGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2095 428 SMART ring_2 367 404 IPR001841 -
Tpr6g2095 428 MobiDBLite consensus disorder prediction 96 129 - -
Tpr6g2095 428 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 6 428 IPR044235 GO:0061630|GO:1904294
Tpr6g2095 428 CDD RING-HC_RNFT1_like 366 405 - -
Tpr6g2095 428 ProSiteProfiles Zinc finger RING-type profile. 367 405 IPR001841 -
Tpr6g2095 428 SUPERFAMILY RING/U-box 358 410 - -
Tpr6g2095 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 415 IPR013083 -
Tpr6g2095 428 ProSitePatterns Zinc finger RING-type signature. 382 391 IPR017907 -
Tpr6g2095 428 MobiDBLite consensus disorder prediction 41 63 - -
Tpr6g2095 428 Pfam Zinc finger, C3HC4 type (RING finger) 365 408 - -
Tpr6g2095 428 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2095 Tpr-Chr6 22691893 22697158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2095 1 428 C3H Transcription Factor Family AT5G01960 71.429 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2095 - K22379 gmx:100818546 630.557