Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2093 ATGGCTGCAAATTCTGATAATATCTTGTCCTTGTCATTGCGGCCTACTTCAGAGGTTGATGGTGGCAATGATTCTCGCCGAGTTGCAGTGTGTTCTCTTTGCCGCAAGGCCTTATCACCTGATGATGAGATAACAGGCGATCTTTCCACTGGTGGTGTATGCGGTGATTGTAAATTTTTATTGCTTGAAGACTTTGGGAATCACACCCTTACACAAAGCTCTCGAAGGAGGCTTAGAGGAAGATTGAGACATGGTAGTTCTGAATCAGTTGAGAACCCTACATCTGTAGATGAAGATCAATTTGTAGATGGTGATAACCCTGCATGGTCATTGCAATATGCTAGTGCAAATACGACTCCTAGTGGGTCTAGAAGCTGGAGGCATGCTCTCTCAGATACTGACAGTGATGGTTTTGATAATTGGCATTCTCTTCATGGTGAAAACGAATTTGGTAATTGGTCTCCTCTTTATGGTGAAAATGAATCAAGTTCGAGTTTTATACCGTATAGGATTCCTCGCAGTGAGACTGATTCTTTTTCTTTCAGTGCTTATGGAGGTGAGTCAGATATCTCTGTGGATAGACAGAGTTTTGTAGGCACTGGAATTTTTAATTTACCTGATGAGGGAGATGAGTTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCATTGGCCATTGGAATTCGGATGATACACAAGATAATGACGAAGAAGAGGAGGATGAGGACGATGAAGACGAGGGGGAAAGAGAACTACCTGAAGTAGAAGCTGCTACTGAACCTGAGGGAATATTTAGCCAGATAATCAGAGAAACTTGGTTAGCTTTGGACGATGCTGATTTACCTCATGGATCTGATTTTGGAGATTTCCTCGATACTAGACGCTTCGATGATCTGCTTGATCATCTTGCTCAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCATTTGTGAATAATCTTCCTTGTGTAGTCATTAGCAAGGAACACGAGAAGCACGATGAACTAGTTTGTGCCATCTGCAAGGATGTATTGGCCCTTGGCACTAAAGTAAATCAACTTCCATGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAGACCACTGATGGTAGAAATGTGATCTATGAGAGACATCAACTAAATGTTATGGATGATAGTTTCTCTGATATTTCTGATGGAGCTGAAGCGGGTGAAGAAGATGGTATCACTACTCATGATACCGCAGATTCTTCTGCAATAAGAGGTGGCAGAGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGAATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAAATTGAAGGGACTAGACATTCGAGTGCTCACTATTTGTCTGCGCAAAATCAGCACGGTGTTCGTGTTTATGGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1554 0.4266 MAANSDNILSLSLRPTSEVDGGNDSRRVAVCSLCRKALSPDDEITGDLSTGGVCGDCKFLLLEDFGNHTLTQSSRRRLRGRLRHGSSESVENPTSVDEDQFVDGDNPAWSLQYASANTTPSGSRSWRHALSDTDSDGFDNWHSLHGENEFGNWSPLYGENESSSSFIPYRIPRSETDSFSFSAYGGESDISVDRQSFVGTGIFNLPDEGDEFDSDTDIDPMHAGIGHWNSDDTQDNDEEEEDEDDEDEGERELPEVEAATEPEGIFSQIIRETWLALDDADLPHGSDFGDFLDTRRFDDLLDHLAQNDSSRRGAPPAAASFVNNLPCVVISKEHEKHDELVCAICKDVLALGTKVNQLPCSHLYHSHCILPWLKTRNSCPLCRFELPTDDKDYEEGKQTTDGRNVIYERHQLNVMDDSFSDISDGAEAGEEDGITTHDTADSSAIRGGRGRWLFLAAAPIVSLVGMVIVLWLGRNSQIEGTRHSSAHYLSAQNQHGVRVYGSQNQRESRSRRWWCPF* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2093 517 MobiDBLite consensus disorder prediction 233 254 - -
Tpr6g2093 517 CDD RING-H2_RNF126_like 342 383 - -
Tpr6g2093 517 Pfam Ring finger domain 342 383 IPR001841 -
Tpr6g2093 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Tpr6g2093 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 284 414 - -
Tpr6g2093 517 MobiDBLite consensus disorder prediction 226 262 - -
Tpr6g2093 517 SMART ring_2 342 382 IPR001841 -
Tpr6g2093 517 MobiDBLite consensus disorder prediction 77 98 - -
Tpr6g2093 517 SUPERFAMILY RING/U-box 322 389 - -
Tpr6g2093 517 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Tpr6g2093 517 PANTHER OS06G0101300 PROTEIN 284 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2093 Tpr-Chr6 22676541 22679081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2093 19 517 C3H Transcription Factor Family AT5G01980 40.370 3.80e-102 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2093 - - mtr:MTR_7g074170 788.875