Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2068 ATGGATTTGAGATATGGTGGTAGAGATGGACCTTGTGGTGCTTGTAAGTTTCTAAGGAGAAAATGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGACAAGGAAGTGCTCATTTTGCAGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCAGCTAAGTTACTGATGCGGATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAGGCTCTTGCTAGAGCTACTGATCCTGTTTATGGTTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTTGTGGAGTTGCAAGCAGAGTTAGCTTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTCAAGAAACTCAATTTCAACAACCTCAGAACTCTTCAATATCCCCAACTATGCATTCCTCATCACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAATCCATCATACTATTCCTATCATCAACAACTCAATGACCAAGAACTCCAAGCTAATTTGCCATGA 582 0.3883 MDLRYGGRDGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQVVELQAELAYVQARLSILNRISQETQFQQPQNSSISPTMHSSSLHHLSSNNETSYMSMQNHHPIPFELSNFHNNPSYYSYHQQLNDQELQANLP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2068 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 8 161 - -
Tpr6g2068 193 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 161 - -
Tpr6g2068 193 Pfam Lateral organ boundaries (LOB) domain 11 111 IPR004883 -
Tpr6g2068 193 ProSiteProfiles LOB domain profile. 10 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2068 Tpr-Chr6 22356384 22359853 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2068 7 164 AS2 family AT4G00210 60.127 2.83e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr6g2068 LOB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2068 - K21994 mtr:MTR_7g075230 304.679