Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2055 ATGAGTTTTTTGCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTCATCAATGGATGCTTCTCCTTCTTCGGTTTCCAACGAGCGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACTCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGGTCGATGACGCTATTCTTCACTACAGGAATGGCCATAGGATCCTTCTCGAAGCTAATTCCACTATTGTTCCTTCCTTCATCACTTCAAGTGAGAAACAAAAGGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTATCTGAGAGATTGCAGGCCCTCAATAGACGAGCAGGTAGCTCCGTTGCCAATCAGAGCACTTCAAACGTTGCACCAACTGCTGCAGTTCCAACCAAACTATCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTACCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTTTTTGGTCCACCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCGTCCTTGACGTCAAAATGGGTTGGCGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACTGAAGGTAAGTATAGATCGAGTCATGATGGGAAGGAAATTAATATGTTGAGATATAATTCTTTGTTTTTTTGTGACCAAATTTTGGACTCCAAATATGACCATCACTATTGTTTTGCTTGGTTTGCAGGATACTCTGGAAGTGATCTGCAAGCGCTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACCGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGAAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1554 0.4093 MSFLQGIIDSFNSVFSPQSIDQNSSSSSMDASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLVDDAILHYRNGHRILLEANSTIVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNVAPTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGKYRSSHDGKEINMLRYNSLFFCDQILDSKYDHHYCFAWFAGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWKELEKWNEEFGSN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2055 517 PANTHER BNAC04G50250D PROTEIN 4 393 - -
Tpr6g2055 517 PANTHER BNAC04G50250D PROTEIN 444 517 - -
Tpr6g2055 517 ProSitePatterns AAA-protein family signature. 343 362 IPR003960 GO:0005524|GO:0016887
Tpr6g2055 517 CDD MIT_spastin 45 123 - -
Tpr6g2055 517 Pfam Vps4 C terminal oligomerisation domain 483 515 IPR015415 -
Tpr6g2055 517 MobiDBLite consensus disorder prediction 129 183 - -
Tpr6g2055 517 SMART AAA_5 237 373 IPR003593 -
Tpr6g2055 517 Pfam ATPase family associated with various cellular activities (AAA) 241 371 IPR003959 GO:0005524|GO:0016887
Tpr6g2055 517 SMART smart 45 122 IPR007330 -
Tpr6g2055 517 Pfam AAA+ lid domain 446 468 IPR041569 -
Tpr6g2055 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 514 IPR027417 -
Tpr6g2055 517 Gene3D - 372 406 - -
Tpr6g2055 517 CDD AAA 226 371 - -
Tpr6g2055 517 Gene3D - 427 503 - -
Tpr6g2055 517 PANTHER AAA DOMAIN-CONTAINING 444 517 - -
Tpr6g2055 517 PANTHER AAA DOMAIN-CONTAINING 4 393 - -
Tpr6g2055 517 Gene3D - 199 371 IPR027417 -
Tpr6g2055 517 MobiDBLite consensus disorder prediction 129 157 - -
Tpr6g2055 517 Gene3D - 37 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2055 Tpr-Chr6 22202670 22210046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2055 181 467 Calmodulin-binding Proteins AT3G56690 36.860 6.25e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2055 K13254 - gmx:100780946 763.066