Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2037 ATGGGTAGAGGGAGAGTTGAGCTGAAGAGGATAGAAAACAAAATCAACCGGCAAGTTACTTTCTCAAAAAGAAGAAATGGCTTATTGAAAAAAGCTTATGAACTCTCAGTTCTATGTGATGCTGAAATTGCCCTAATCATTTTCTCAAGCCGTGGCAAACTCTCTGAATTTGGAAGCTCAACTTCTGGCATTGGCAAAACCCTGGAACGATATCAGAGATGCTCTTATACTTCTCAAAATGATAATGATAATGAACATGAAACTCAGAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCTCAAAGGCAATTGCTAGGGGAAGATCTTGGACCATTGAACATAAAAGAGTTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTAGGAAAAAGGAACTTCACCTTGGAGAAATAAATAAGCAACTTCGATTCAAGCTTGAATCAGATGGATTTAATCTGAAAGCATATGAAAGCATGTGGAACACTACTAATTCTGCATCTGTTGCTGGAGGAGGCAACTTTCCTTTTCAGCCTTCTGAAACCAATACCATGGATTGCCAACCTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAACAATCCAGTGCTCCAAAGAACATGGTTGGTGAGACTAGCTTTATCCAAGGATGGATGCTTTGA 750 0.392 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSTSGIGKTLERYQRCSYTSQNDNDNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKKELHLGEINKQLRFKLESDGFNLKAYESMWNTTNSASVAGGGNFPFQPSETNTMDCQPEPFLQIGYQNYVQAEQSSAPKNMVGETSFIQGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2037 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g2037 249 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Tpr6g2037 249 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Tpr6g2037 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 235 - -
Tpr6g2037 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g2037 249 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Tpr6g2037 249 Coils Coil 95 115 - -
Tpr6g2037 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 PANTHER MADS BOX PROTEIN 1 235 - -
Tpr6g2037 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr6g2037 249 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2037 Tpr-Chr6 22014629 22020927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2037 1 249 MADS-box Gene Family AT2G45650 63.922 2.77e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr6g2037 K-box 8.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2037 K09264 - tcc:18614251 362.459