Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2036 ATGGTGAGAGGAAAAACTCAAATGAAACGTATTGAGAATGCAACAAGTAGGCAGGTGACATTCTCAAAGCGGCGTAATGGTTTGCTGAAGAAAGCCTTTGAACTATCTATTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTTTCTCCAAGAGGAAAACTTTATGAGTTTTCTAGCTCCTGCATGCAGGACACAATTGAACGCTACCGCAGGAATACCAGGAGTGCTCAACCAATTCAAAGATCAGATGAACAAAACATGCAGAATATGAAGCAGGAAACAGCAAGTTTGATGAAGAAGATTGAACTTCTTGAAGCTTCGAAACGGAAACTCATGGGAGAAGGTTTGGGGTCATGCACCATGGAAGAGCTACAACAGATAGAACAACAGTTGGAAAAGAGTGTCAGCGTTGTTCGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGAGCAACTAAAAGAAAAGGAAAAAGCCCTACTTGCTGAAAATTCCAGGCTCTCTAAGCAGCCACAACCACAGCCAGAACCAGCAGCAAAGGATCATCAGAGAGAAAATCAACCTTATGCTGAAAGCAGTCCAAGCTCAGATGTGGTGACTGAATTGTTCATTGGACTACATAGGTCTAATTGA 633 0.4123 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSILCDAEVALIIFSPRGKLYEFSSSCMQDTIERYRRNTRSAQPIQRSDEQNMQNMKQETASLMKKIELLEASKRKLMGEGLGSCTMEELQQIEQQLEKSVSVVRARKNQVYKNQIEQLKEKEKALLAENSRLSKQPQPQPEPAAKDHQRENQPYAESSPSSDVVTELFIGLHRSN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2036 210 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Tpr6g2036 210 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Tpr6g2036 210 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g2036 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 Coils Coil 87 107 - -
Tpr6g2036 210 Coils Coil 143 170 - -
Tpr6g2036 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Tpr6g2036 210 MobiDBLite consensus disorder prediction 162 198 - -
Tpr6g2036 210 PANTHER MADS BOX PROTEIN 1 207 - -
Tpr6g2036 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g2036 210 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Tpr6g2036 210 Coils Coil 121 141 - -
Tpr6g2036 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr6g2036 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2036 Tpr-Chr6 21977480 22004020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2036 1 158 MADS-box Gene Family AT2G45660 75.316 8.63e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr6g2036 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2036 - - gmx:100037477 323.168