Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2023 ATGAGTTTTGGTGACAATAAGTCAGGTTGTGGTGAAAGTGCTAAAATCAGTTCAGTATCAGATATTGCTTTTAGCAACGGAACAAACCATAACAACAACTATAGAATAATAATGCCTTCTAGTGCAATCTCACAACCTCATTTATCAACTCCAACTTTGGTTAAATCCATGTTCAACTCACCTGGTCTATCTTTATCACTTCAAACAAATATGGAAGGACAAGGTGGAGGTGGTGATATGAGTAGATTAATGGCAGAGAGTTTTCATAGTTTGAGAAGGAACAGAGAAGAAGAAGAAGAAGAACATGAAAGCAGATCTGGTGGTAGTGATAACATAGATGGTGTTTCCGGTGACGATGCTGCCGACAATCCACCAAGGAAAAAACGTTATCACCGACATACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCACCCTGATGAAAAACAAAGGCTTGAACTCAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAGCGCCATGAAAATTCACTACTTAGGCAAGCAAATGATAAGCTAAGAGTTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCTATGTGCTCAAATTGTGGAGGACCAACAATTATTAATGAAATTTCACTTGAAGAACAACATCTAAGAATTGAAAATGCAAGATTAAAAGATGATCTAGAAAGAGTTTGTACACTTGCTAGCAAGTTTTTAGGCCGTCCGATTACGTCGTTACCAAACTCAAGTTTAGAATTTAGTTTTGTTGGTGATCATAGCAATACTTTGCCTTCAACATTACCCTTAGGACAAGATTTTGGAATGGTGTCAATTTCACCACCTTCAACAATAATAGCAACAAATAGTACTAGTAGTAATGGTTTTGATAGATCAATAGAGAGGTCTATGCTTCTTGAACTTGCTTTGGTTGCAATGGATGAGTTAGTAAAAATGGCACAAACTAATGAGCCCCTTTGGATTAGAAGTGTTGAAGGTGGAAGAGAAATTCTTAACCATGAGGAATATACAAGGACAATAAGTACTTCTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTCTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGAACCTCAACAAATGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCTCTTCAATTGATGCAAGCTGAACTTCAAGTACTATCTCCATTGGTTCCAGTTCGTTTGGTGAATTTTCTAAGGTTTTGCAAGCAGCACGCAGAAGGAGTATGGGCAGTGGTTGATGTGTCTATAGATACCATCACACAAACTTCAGCTGTTGCATCCACTTTTCTTAATTGTAGGAAGCTTCCTTCTGGTTTTCTGGTTCAAGATATGCCAAATGGTTACTCCAAGGTGACATGGGTGGAGCATACGGAATACGAAGAAAGCCAAGTTCACCAACTTTATAGGCCCTTGCTAAGCTTAGGCATGGGATTTGGTGCACAACGTTGGGTTGCAACCCTACAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCGGCACTTCCATCTCGAGAACAATCAGCAATAAGCTCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCACATCGAATGACAAACAACTTTTGTGCCGGAGTTTGTGCATCGACGGTCCACAAATGGAACAAGTTGAATGCAGGGAACGTGGGCGAGGATGTTAGGGTGATGACGCGAAAGAGTGTTGATGATCCTGGTGAGCCACCGGGGGTTGTACTAAGTGCAGCAACCTCCGTTTGGCTACCTGCTTCACAGCAAAAAGTCTTCAATTTCTTACGCAACGAGAGGCTTCGAAGCGAGTGGGACATACTCTCCAATGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTTCTACGAGCTAGTGGTAATAATTCAAGCCAAAGTAGCATGTTGATTCTACAGGAAACATGCACAGATGCGTCGGGTTCACTTGTTGTGTATGCGCCGGTAGATATACCTGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCTTACGTTGCACTTCTTCCGTCGGGCTTTGCCATCTTGCCTGATGGATATAGCGACGATAGTGATAATCAAAGAGGCGGATTGCAGCATAGAGCAAATGGATCTCTTTTGACGGTCGCGTTTCAGATACTTGTGAACAGTCTTCCCACCGCGAAGCTCACGGTGGAATCAGTTGAGACAGTTAACAATCTCATTTCATGTACCGTTCAAAAGATAAAAGCAGCACTTCAATGTGAGAGTTGA 2439 0.4145 MSFGDNKSGCGESAKISSVSDIAFSNGTNHNNNYRIIMPSSAISQPHLSTPTLVKSMFNSPGLSLSLQTNMEGQGGGGDMSRLMAESFHSLRRNREEEEEEHESRSGGSDNIDGVSGDDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRVENMSIREAMRNPMCSNCGGPTIINEISLEEQHLRIENARLKDDLERVCTLASKFLGRPITSLPNSSLEFSFVGDHSNTLPSTLPLGQDFGMVSISPPSTIIATNSTSSNGFDRSIERSMLLELALVAMDELVKMAQTNEPLWIRSVEGGREILNHEEYTRTISTSSCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARTSTNEVISSGINGTRNGALQLMQAELQVLSPLVPVRLVNFLRFCKQHAEGVWAVVDVSIDTITQTSAVASTFLNCRKLPSGFLVQDMPNGYSKVTWVEHTEYEESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSALPSREQSAISSGGRRSMLKLAHRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGVVLSAATSVWLPASQQKVFNFLRNERLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASGNNSSQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAILPDGYSDDSDNQRGGLQHRANGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2023 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 809 IPR042160 -
Tpr6g2023 812 CDD START_ArGLABRA2_like 319 550 - -
Tpr6g2023 812 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Tpr6g2023 812 SUPERFAMILY Homeodomain-like 117 184 IPR009057 -
Tpr6g2023 812 Pfam START domain 325 551 IPR002913 GO:0008289
Tpr6g2023 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 77 809 - -
Tpr6g2023 812 CDD homeodomain 126 184 IPR001356 GO:0003677
Tpr6g2023 812 ProSiteProfiles START domain profile. 315 554 IPR002913 GO:0008289
Tpr6g2023 812 SUPERFAMILY Bet v1-like 317 551 - -
Tpr6g2023 812 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Tpr6g2023 812 SMART HOX_1 125 188 IPR001356 GO:0003677
Tpr6g2023 812 Pfam Homeodomain 127 182 IPR001356 GO:0003677
Tpr6g2023 812 Coils Coil 193 213 - -
Tpr6g2023 812 MobiDBLite consensus disorder prediction 91 108 - -
Tpr6g2023 812 Coils Coil 225 245 - -
Tpr6g2023 812 MobiDBLite consensus disorder prediction 91 135 - -
Tpr6g2023 812 Gene3D - 116 201 - -
Tpr6g2023 812 SMART START_1 324 551 IPR002913 GO:0008289
Tpr6g2023 812 SUPERFAMILY Bet v1-like 579 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2023 Tpr-Chr6 21873712 21882119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2023 30 812 Homeobox Transcription Factor Family AT3G61150 63.926 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr6g2023 START 7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2023 K09338 - gmx:100787537 1224.92