Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2016 ATGGTGGAAGATGCTGTTGCAGTTGATGCAAGTTGTTCAACAGAAGATTGGTTGTTACATGCAAAGGAACTTGTTCCTATTGCTCTTGATAAAGCAAGAGAGGTTAAAGGTTTTCCTACTAGATGGAAAATGATCATTTCTAGATTAGAACAGATTCCATCCATGTTATCAAATTTATCAAGCCATCCATGTTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCCAATTCCCTCAGAGATGCGATCAAATCAGCTGAATTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCAGATGCAGAGTGATCTGGATGCATTAATCGGGAAAATGGATTTGAATTTACGAGACTGTGGACTTTTGATCAAAACTGGTATGCTCGGCGAGGCTACTTTGCCGTTGACAGTGGCATCTGTGTCAGGTTCTGTGGAACAATCAGATTCTGCAGCACACAACAACATAAGGGAGTTGCTCGCGCGCCTTCAGATCGGTCACTTAGAAGCGAAACACAAAGCTTTGGACAGTGTTGTTGAAGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTATGAGTAGGAGTAATATTGCTGCACTGGTTCAATTGCTTACAGCAACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCAGGTAGCTGCGAGGATTGGTTAGTTTCTGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAGGCTGCGATATCGCTTCAGAGGTTATCAATGTCAGCTGAAACATCGCGTGAAATAGTCGGACATGGTGGCGTGTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCCGTTTCGCAGGCTGCAGCAGCTTGTTCATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAACAAGGGATTGTTAGGGTTATGATCAATCTGTTAACTTGTGGAATGTTGTTAGGTTCCAAAGAATATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTTAGGAGTCTTTTAGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCGGTCGCGGCGTTAAGGAATTTGGTTGGATCGGTTTCTGAGACAACTTTGGTTTCATTAGGATTACTTCCTCGTTTGGTTCATGTTTTGAAATCCGGATCATCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCAACTGAGATGAAGAAATTGGTTGGCGAAGCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAGGCTAAACCAAGTAGTGCTAGAGGAATTTCTGCACAAGCATTAGCAAGCTTGATGACTGTGTCTTATAATAGAAGAGAAGTTAAGAAAGATGATAAAAGTGTGCCGAATTTGGTTCAGTTGCTTGATCCTAGTCCTCAAAACAATGCAAAAAAATATGCAGTTACTTGCCTTGGATTGATTTCTTCAAGTAAGAAATGTAAGAAACTAATGATCTCATATGGTGCTATTGGATATTTGAAGAAACTTACTGAGATGGATATTCCAGGAGCTCAAAAGTTACATGAGAGATTGGAAAGAGGGAAATTGAGAAGTTTGTTTGGCAAGAAATAG 1686 0.4164 MVEDAVAVDASCSTEDWLLHAKELVPIALDKAREVKGFPTRWKMIISRLEQIPSMLSNLSSHPCFSKNALCKEQLQAVSNSLRDAIKSAELCLKEKYEGKLQMQSDLDALIGKMDLNLRDCGLLIKTGMLGEATLPLTVASVSGSVEQSDSAAHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNIAALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAAISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACSLKNISAVPEVRQVLAEQGIVRVMINLLTCGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGVRSLLAYLDGPLPQESAVAALRNLVGSVSETTLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKPSSARGISAQALASLMTVSYNRREVKKDDKSVPNLVQLLDPSPQNNAKKYAVTCLGLISSSKKCKKLMISYGAIGYLKKLTEMDIPGAQKLHERLERGKLRSLFGKK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2016 561 Gene3D - 138 332 IPR011989 -
Tpr6g2016 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 4 561 - -
Tpr6g2016 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 561 - -
Tpr6g2016 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Tpr6g2016 561 SUPERFAMILY ARM repeat 157 540 IPR016024 -
Tpr6g2016 561 Gene3D - 333 544 IPR011989 -
Tpr6g2016 561 SMART arm_5 351 390 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 391 430 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 472 514 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 309 350 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 268 308 IPR000225 GO:0005515
Tpr6g2016 561 SMART arm_5 186 226 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2016 Tpr-Chr6 21811028 21814988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2016 207 480 U-box Gene Family AT3G54790 29.032 5.44e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2016 - - gmx:100789140 895.96