Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2014 ATGTTGGGTTCAGGGACCAATTTGGTGACAACTGTTATTGGATTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACAAGAATAATTTGTGGAAGGCTTAGAGGTGGTGTTGAATCTAGGATGATGTATGAGATTGAATCAAGATTTGATATAGAACAGCCAGAACATCGTGTTAATGACCCTGACACTGAACCAGTTCTGATTGAAGCAATCCCTACTTTGAAGTTCAATCAAGAGGCTTTCAGTTCCATTGAAGATACACAGTGTGTAATATGTTTGGCAGACTACAAAGAAAGAGAAATATTGCGCATCATGCCCAAATGCGGCCACACTTTTCATCTTTCGTGCATTGATATATGGCTGAGGAAACAATCTACCTGTCCAGTGTGCCGTCTACCATTGAAAAACTCTTCCGAAACAAAACATGTGAGACCTGTGACATTCACTGCGAGCCAACCTCTTGACGAGTCACACACATCGGATAGGAACACAGATATCGAGAGGCACATTGAACCTACTGCTGTTAACTCCATACAACCAACTTCCTCAGAATCAGAAGCAAGGCAATGA 573 0.4206 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRFDIEQPEHRVNDPDTEPVLIEAIPTLKFNQEAFSSIEDTQCVICLADYKEREILRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTASQPLDESHTSDRNTDIERHIEPTAVNSIQPTSSESEARQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2014 190 MobiDBLite consensus disorder prediction 149 190 - -
Tpr6g2014 190 Pfam Ring finger domain 89 132 IPR001841 -
Tpr6g2014 190 PANTHER OS11G0150450 PROTEIN 1 175 - -
Tpr6g2014 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 138 IPR013083 -
Tpr6g2014 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Tpr6g2014 190 CDD RING-H2_EL5_like 89 132 - -
Tpr6g2014 190 SUPERFAMILY RING/U-box 79 138 - -
Tpr6g2014 190 SMART ring_2 90 131 IPR001841 -
Tpr6g2014 190 MobiDBLite consensus disorder prediction 175 190 - -
Tpr6g2014 190 PANTHER OS02G0676500 PROTEIN 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2014 Tpr-Chr6 21791025 21793128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2014 70 135 C3H Transcription Factor Family AT4G10160 51.515 4.45e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2014 - - ccaj:109802319 355.14