LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g2012	ATGGGTGTTGGTGGTAATTTCTGGGACTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTATTGACTTATCGTTTTGGATTGTTCAGCATAACAATGTTATCAAAACCCATGTCAACAAACCTCATCTCAGACTCACTTTCTTCCGTACGATTAATCTGTTTTCTAAGTTTGGAGCATTTCCCGTGTTTGTTGTTGATGGGACTCCATCGCCATTGAAATCACAAGCCAGGATTGCTAGATTTTTCCGGTCATCTGGAATTGAATTGACTAGCTTGCCGGTACCTGGAGGCGGTGTTTCAGCTGAGAGGAACAGTTCATTTTCAAAATGTGTTCAAGAGTGTGTGGAACTTGCTAAGCTACTTGGGATTCCTGTACTGAAAGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAGTTAAATAATGAAGATCATGTATATGCATGCATCGCACCTGACAGCGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATCTTTCGCTCCCAATTCCAAAGAACCGTTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCACGATTTGAGTGGTGTTCAAGGGATTGGACTTGACAGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAATTCCTATTGACATTAAATCTGAGGACAATGTGGATATTGATGGGAGCTCCCCAAATACGAAACAACCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATACGAAGTTTTCGTGTGAGTTTTGTGTCACAGATAACCATGAAAGTTGCCTGAAAAAACCAGAGGGTTTTAAATGTGATTGCATCTCTTGTGGTATGAATAGGAAACATAAGGAGCAGAAAAAGATGGAAAATTGGCACACAAGAATTTGTGACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTATTTTTCTGCAAATGATGGCCCTCAGATCTCATGGGAACAACCAAAAGTTGAACTCCTGATTGGTTTTCTAAACTTCCATCAGCACTGGGATCCGTCATACATTCGACGGATAATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAATGGCTACAACTACAACTGATAATTTGTTGTTTGGACAGTTTGAGTTTGATTCTTTAAAACGTGTGAAAACGAGATACGGATATCAGTCTTATGTTGTCAAGTGGAAACGTGTGATGGGAAATGTTGCTTCTAAAACTCCATCAAATCAATCTGGCACGCAACAAGATGCTATGGATCTAGAGCTTGATGAAACGGTGGATCTACATCTACTGGACGATTGCGATTTTCCTGAGACTTGTGAAGAAGGTGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTATAGGTGCTGCTTTTCCGGAAGAAGTGAAAAGGTTTTGGCAGGAACAGGAACTGAAGGAATCGAAAAGAAAAAAGAATCCAACCTCAAGATCTCAAGAAAATGAAACGTCCTCAACATCATCACTAAACTCAAAAGGTGTCCAGCTAAATATAACAGAGTTCTTCCCAACAACCAAAAGTAAACATAATCCAAAACATGGAGAAGAGTCATCATCCAAGAAAGACGATAGCCCGGATAGTGGAGGCTCAAAAATGAAGAGAAAATCGTCAAGTCCTAATATTCCAAAATCTGTTAGGCGTCGCCTTTTGTTTGACTAG	1848	0.3988	MGVGGNFWDLLKPYARNEGFDFLRNKRVAIDLSFWIVQHNNVIKTHVNKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPGGGVSAERNSSFSKCVQECVELAKLLGIPVLKAKGEAEALCAQLNNEDHVYACIAPDSDAFLFGAKCIIKSFAPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGLDSALRFVQAFSEDDVLNRLHEIGKGNAFQIPIDIKSEDNVDIDGSSPNTKQPHCSFCGHPGSKKDHTKFSCEFCVTDNHESCLKKPEGFKCDCISCGMNRKHKEQKKMENWHTRICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQISWEQPKVELLIGFLNFHQHWDPSYIRRIMFPMMSTIFLREMATTTTDNLLFGQFEFDSLKRVKTRYGYQSYVVKWKRVMGNVASKTPSNQSGTQQDAMDLELDETVDLHLLDDCDFPETCEEGGCSFLLTDENMDLIGAAFPEEVKRFWQEQELKESKRKKNPTSRSQENETSSTSSLNSKGVQLNITEFFPTTKSKHNPKHGEESSSKKDDSPDSGGSKMKRKSSSPNIPKSVRRRLLFD*	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g2012	615	Pfam	XPG I-region	131	213	IPR006086	GO:0004518
	Tpr6g2012	615	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Tpr6g2012	615	Gene3D	-	198	259	-	-
	Tpr6g2012	615	CDD	PIN_GEN1	2	202	-	-
	Tpr6g2012	615	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Tpr6g2012	615	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Tpr6g2012	615	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Tpr6g2012	615	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Tpr6g2012	615	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Tpr6g2012	615	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Tpr6g2012	615	MobiDBLite	consensus disorder prediction	569	593	-	-
	Tpr6g2012	615	MobiDBLite	consensus disorder prediction	528	615	-	-
	Tpr6g2012	615	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	601	IPR006084	-
	Tpr6g2012	615	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-
	Tpr6g2012	615	Pfam	XPG N-terminal domain	1	89	IPR006085	GO:0004518
	Tpr6g2012	615	MobiDBLite	consensus disorder prediction	541	568	-	-
	Tpr6g2012	615	Gene3D	-	3	197	-	-
	Tpr6g2012	615	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	601	-	-
	Tpr6g2012	615	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	415	IPR036279	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g2012	Tpr-Chr6	21768828	21773970	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g2012	16	313	Core DNA Replication Machinery Family	AT5G26680	26.426	3.55e-18	85.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g2012	K15338		-	gmx:100791251	904.434