Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2001 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTACTGAAGAGGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTTCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCAGGAAGAACGGACAATGAGATAAAGAACTTCTGGAACACGCATTTGAAGAAACGTCTGAAAAGCATGGGGATTAATCCAGAAACACATGAGCCAGTAGCTTCATCAAGTTACCCCAATCACAAGTCACATGCCTCGATTTCGACACGTCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCATCACACTTCAACAACAACAACAATCCTAATTCCATTACAAAAACTGATTCTTCTTCTTCTTCTGATTACTTTCTCCGTATATGGAACTCTGAAGTTGGAGATGCATTTCGCAATGTTAACAAAATTACTAGTTGTTGTCAGAGTCCTATTTCTGCAGGATCATTATCTACCAACAAATGTGACTCTGTTATAGCAGAGTTAGCCTCTAATAATCCAATAAGCAATAGTGTGAAAGAAGAGTTTGAGTGGAAAAACTATAAGTTTTGTGCTGAAGATTTGATTCTTGGATATGATTCATCAAGCTCTAATGACATGGATGATTCATCAGACACTGCTTTGCAGCTCTTGTTGGATTTTCCTATGAACAATGACATGAACTTCTTGGAAAACTCTTTTGCTTTTTCCCTTTAA 915 0.4022 MGRTPCCDKKGLKKGPWTTEEDEILANYINKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGINPETHEPVASSSYPNHKSHASISTRHMAQWESARLEAEARLSIESSSHFNNNNNPNSITKTDSSSSSDYFLRIWNSEVGDAFRNVNKITSCCQSPISAGSLSTNKCDSVIAELASNNPISNSVKEEFEWKNYKFCAEDLILGYDSSSSNDMDDSSDTALQLLLDFPMNNDMNFLENSFAFSL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2001 304 Gene3D - 70 145 - -
Tpr6g2001 304 PANTHER PROTEIN ODORANT1-LIKE 1 299 - -
Tpr6g2001 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr6g2001 304 CDD SANT 16 62 IPR001005 -
Tpr6g2001 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr6g2001 304 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tpr6g2001 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr6g2001 304 Gene3D - 11 68 - -
Tpr6g2001 304 CDD SANT 70 113 IPR001005 -
Tpr6g2001 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr6g2001 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr6g2001 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 299 - -
Tpr6g2001 304 SMART sant 67 115 IPR001005 -
Tpr6g2001 304 SMART sant 13 64 IPR001005 -
Tpr6g2001 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2001 Tpr-Chr6 21691338 21693838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2001 1 297 MYB Transcription Factor Family AT3G61250 59.272 9.03e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2001 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2001 K09422 - gmx:100816569 432.565