Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2000 ATGAACAACAGAGGTAGATATCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTGGTTTGAACTCGAACACCGGGTATCAACAGAGGCCACAACAACAACAACAACAGTATGTGCAGAGGCACATGGTGCAAAATCAGAATCCACAACAATACCAGCAGCAGAATCAACAGAATCATCAGTATCAGCAACAGCAGCAGCAACAACAACAACAACAGTGGCTGAGAAGGAACCAGTTGGGTGGTACTGACACCAACAATGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCAAACGACACTAGTTCACAAGATTGGAAGGCAAGACTAAAGCTTCCACCAGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAAGATAATAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCTTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAACCGTATATCATTAACCTTATGGATGAACTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCTGTGAACCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATCCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCAGGAATCTTGTTTGTACCGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGCTTCAATTTGTATAGGATTGAGCAAGAACTCGGCACTGAAATAAAACAAATTCCTCCCTTCATTGATCAGGCAATATATTGTCGGTGA 1518 0.4163 MNNRGRYPPGIGLGRGGGGGLNSNTGYQQRPQQQQQQYVQRHMVQNQNPQQYQQQNQQNHQYQQQQQQQQQQQWLRRNQLGGTDTNNVEEVEKTVQSEANDTSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2000 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 502 IPR001650 -
Tpr6g2000 505 MobiDBLite consensus disorder prediction 48 74 - -
Tpr6g2000 505 Pfam DEAD/DEAH box helicase 156 320 IPR011545 GO:0003676|GO:0005524
Tpr6g2000 505 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 3 505 - -
Tpr6g2000 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 485 IPR027417 -
Tpr6g2000 505 Coils Coil 52 72 - -
Tpr6g2000 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Tpr6g2000 505 SMART helicmild6 382 463 IPR001650 -
Tpr6g2000 505 SMART ultradead3 150 346 IPR014001 -
Tpr6g2000 505 Pfam Helicase conserved C-terminal domain 357 463 IPR001650 -
Tpr6g2000 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Tpr6g2000 505 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 505 - -
Tpr6g2000 505 Gene3D - 336 504 IPR027417 -
Tpr6g2000 505 CDD SF2_C_DEAD 343 472 - -
Tpr6g2000 505 CDD DEADc_DDX6 133 333 - -
Tpr6g2000 505 Gene3D - 85 335 IPR027417 -
Tpr6g2000 505 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2000 Tpr-Chr6 21677565 21683715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2000 131 495 Eukaryotic Initiation Factors Gene Family AT3G19760 38.692 1.28e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2000 K12614 - tcc:18614173 834.328