LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1990	ATGACAAAGAGGTCTCAAAGATTCCCTGTGCAGTATGAGAAAGATCAGTCAGGTTGTATGTGGGGATTTATTAGTATGTTTGATTTTCGCCATGCTCGCTTTACTCGGAAGTTGATTGCTGATAAGAGGCACAACAACAAGCATGCTCTTGGTGCTGTACTTACCAAGAACAAATTTGAGGCATTGAGCAATTTGGATGAAGAATATCAAGGCAATATGGACAGAGGAGAGAGTAAGAGACTAACGGTGACTACCGATGCTGACAAGCTTAGTGTGAAGAAACTCATAGAAGAAGAGATGTTCATTGACCAGGATGAAATAAAGGATCAAGGTAATGTTGTTGAATCGACACGAACCGAATTAGGGTCTGAAGATTCGCTGAAGACAGATTCCAAAAGAAAAAGAAAATCACGAAAGAAAAGCCGAGATATGGACAGCAATGATTTGAGTGCAACTTTGAAATCTGAAGTCACACATAATCAGCATTCAAATCAACAATCAAGAGATAATATAGATTTGGACAAGATTATGGAAGATTTTTGTCAAATTGAACGTGCTTGTTCCTTGATGCATGATGACGATGATAGCAAAGTTCTTGCTCAATCAAACCAAAAGAATATCAATTCTGAAGAACTTGCAAGAGATGCAATTCATGATTTTGTGAATCAGATGATATTGAATGGGAAAGATATGGTAGAAGATAAAAAATTCCTTTGCTCTCACGAACTCATGGAAACACTTCAGGTTATAAGCTCGGATAAGGAATTGTTTCTAAAACTTCTACAAGATCCAAATTCCCACTTACTGCGATATATTCAGGAGTTGGAAAATGCTCAAGGGAGAAGTGAAAAAGAATACAATTCTGTTGCTGATTCCAACTTCTCCGAACAAGACCTTGGCAATCTAAAACAAACTCGAGATATTGTCAACCGCAAGCATCATAAATTTTTCTGGAAAAAGGTAAAGTCTCAATCAAAAGTTCCAACAAATAAAAATGTGAAAACTGAGGTTCCAAATAGAATTGTCATTCTGAAACCTGCACCAACAAAAATGCAAAATTCAGAAAGTGAAAACAATGTTGTTTCGTCGCTTGATTCTCGTGATATTGTCCATTACAAAGATCCTTCTGTGAGAGTTGGTTCACCTTTTTCTCTTACAGAGATAAAAAGGAAATTAAAACATGCTATAGGAAAGGAGAAGCATGGAAACCACAAACTCCCTGCTGAACGTCAAAACAATGACTCGAGAGGCAAAGCCATTTGTAAAGATAAAACTGGAATGAAATCTCCTAATAAGGATCATTTTTTCATTGAAAAAATTGCAAGACCTATGTTTGATGTTGTAAAAGGAACCAAGACTGGTATAAATGAAAGTGGTTCTTCGAAGGAAAAAGTTTCGAACTTATACATCGAGGCTAAGAAACATTTATCTGAGATGCTGGTAGATAATGGAGATGATAACACAAGCATTTCTAGCAGGCAGATTCCGAAAACCCTTGGGAGAATACTATCTCTTCCTGAGTACAACTTTTCTCCTCTTGGAAGTCCTGGAGGGAATTTGGAGCATAATTTTTTGACTACACATGCAAGATTATCCACTTCAGATAAAACTTGGGAGGTTAATGAGGATAGCTTGTCTCCCAAGCAAGACACCTATATTGAACAACCCTATCAGGAAACAAACAATTCAAGGAACCAATCAAGCGTTTGTGACAAAAGATCTAATGAAGTACCAGAAATTGAGTCAGACTCAACTCTCTCACATGATCTTGATCACGTTGATACTGCTGAAATCAGTTATCCTGTTAGAGACGAGATAGTTGCGGAAGGTAATTTAGAATTCACAAAAGATATTATTGTTTTGGAATCTTCCTCAGATCCAAACTGCTGTACTGCAGGGAAGGACCAAAATCATGATGTCTCAAAAATTGCTGTTGATGCTATATGTTCTGAATGTTTGAATGGGGATTTAAAAGAGAACCAACAATCATCTCCACTATCTTCCCCTTCTCACTCTTCCATCACTGAGAAAATGGAAGAGCTAGAAAGTTGTACAGATTTATCTGGTCGACCAAGTCCAGTATCTGTGCTCGATATACCGTTCTCCGATGATGACCCTGGCTACTCCACATGTCAGCCTGTTAAATTATGCATACAATCACTACAAATTCGATTTGAGGAACAAGACTGTTCATCGTTGGATCGATTTCATAGAAGAAAATCTTGTCTGGAAGAAAATGAATTGATATATGACTACATAAATGCTGTCTTCCACGCCGCTAGCTTGACACAAGATCAACTATTGATGAAATGTCTTTCCTCAGACAAGATACTAGATCCTTCCTTGTTTGATCAGGTAGAGTTCTTCTCAAACATGCTTTGCCACGAACAGAAGCTCCTATTCGACTGTATCAACGAGGTTCTCATGGAGGTTTGTTGGAATTACTTTGGGGTTTCACCTTGGGTATCATTTGTAAATCCGAGTATAAGGCCAACTCCAAATATGAAGAAGATTATTCTCAAGGTCTGGGAAGGAGTGTGTTGGCATGTCCTTCCTTTACCCCCACCGCATACTTTGGAACAAATTGTTAGGAAAGACATGGCAAGAAATGGAACATGGATGGACCTTCGACTCGATGCTGAAACAGTTGGTTTTGAAATGGGTGATGTCATTCTTGTAGAGCTGATGGAAGATGCAATATTGAGCTTTGTGAATCAAAGTACAGAAAGTTAA	2733	0.3805	MTKRSQRFPVQYEKDQSGCMWGFISMFDFRHARFTRKLIADKRHNNKHALGAVLTKNKFEALSNLDEEYQGNMDRGESKRLTVTTDADKLSVKKLIEEEMFIDQDEIKDQGNVVESTRTELGSEDSLKTDSKRKRKSRKKSRDMDSNDLSATLKSEVTHNQHSNQQSRDNIDLDKIMEDFCQIERACSLMHDDDDSKVLAQSNQKNINSEELARDAIHDFVNQMILNGKDMVEDKKFLCSHELMETLQVISSDKELFLKLLQDPNSHLLRYIQELENAQGRSEKEYNSVADSNFSEQDLGNLKQTRDIVNRKHHKFFWKKVKSQSKVPTNKNVKTEVPNRIVILKPAPTKMQNSESENNVVSSLDSRDIVHYKDPSVRVGSPFSLTEIKRKLKHAIGKEKHGNHKLPAERQNNDSRGKAICKDKTGMKSPNKDHFFIEKIARPMFDVVKGTKTGINESGSSKEKVSNLYIEAKKHLSEMLVDNGDDNTSISSRQIPKTLGRILSLPEYNFSPLGSPGGNLEHNFLTTHARLSTSDKTWEVNEDSLSPKQDTYIEQPYQETNNSRNQSSVCDKRSNEVPEIESDSTLSHDLDHVDTAEISYPVRDEIVAEGNLEFTKDIIVLESSSDPNCCTAGKDQNHDVSKIAVDAICSECLNGDLKENQQSSPLSSPSHSSITEKMEELESCTDLSGRPSPVSVLDIPFSDDDPGYSTCQPVKLCIQSLQIRFEEQDCSSLDRFHRRKSCLEENELIYDYINAVFHAASLTQDQLLMKCLSSDKILDPSLFDQVEFFSNMLCHEQKLLFDCINEVLMEVCWNYFGVSPWVSFVNPSIRPTPNMKKIILKVWEGVCWHVLPLPPPHTLEQIVRKDMARNGTWMDLRLDAETVGFEMGDVILVELMEDAILSFVNQSTES*	911

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1990	910	MobiDBLite	consensus disorder prediction	150	167	-	-
	Tpr6g1990	910	PANTHER	(, RELATED)	1	907	-	-
	Tpr6g1990	910	Pfam	Protein of unknown function (DUF3741)	222	266	IPR022212	-
	Tpr6g1990	910	MobiDBLite	consensus disorder prediction	113	171	-	-
	Tpr6g1990	910	Pfam	Domain of unknown function (DUF4378)	751	898	IPR025486	-
	Tpr6g1990	910	PANTHER	ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED	1	907	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1990	Tpr-Chr6	21590490	21596565	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1990	1	886	TRM (TON1 Recruiting Motif) Superfamily	AT4G00440	33.630	1.46e-108	352

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1990	-		-	gmx:100783243	1209.51

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g1990	6	21590490	21596565	Tpr5g1282	5	25232996	25239012	PCT

Showing 1 to 1 of 1 entries