Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1989 ATGGCAATACAAAGAAACGGTTCTGTGAGTTCGGTTCGCGAAGTCGGGGGAGAAATTGAAGAGGAACCCAATACAGGTGTGGTTAATGAGGCAATCTATGTTGCTGTGTCAAAGGATGTAAAAGAGAGTAAATTGAATTTGATATGGGCAATACAGAATTCTGGAGGAAAGAAGATCTGTATCCTTTATGTTCATGTACCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCATTGAAAGATCAGGAAGTCCAAGCTTTCCGGGAAATTGAAAGGCAAAACATGCATAAGACTCTGGATGAATATCTTCGTATCTGTCAGCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAAAGGAATTATAGAACTTATCTCCCAGTATGGTATCCGGAAGCTTATTATGGGAGCAGCATCTGATAAGAATTATTCTAGGAGAATGATGGACCTCAGATCTAGGAAAGCCATCTATGTATGCGAACAAGCTCCAGCTTCTTGCCATATACAGTTTATCTGCAAAGGCCACCTTATACACACAAGGGATCGTAGTTTAGATGAACGAAACGTAGAGATTGCATCTCCTTTGACACCACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCTATTACATTGGGGCAGAATCACAGGACAGATTCAAGTAGTTCTATTCAAGAGTTATTTCGCAGAGCGAGGTCTGCCAATGATGTACAGAGAGCAAGCATATCTTCTCCAAATGACACTGAAGGGTTTTCAACTCCTTCTAACAGGCGAGGTACAGAAGTAAGTTCTGATGACTCCGATACGATTTCAAGGACGAGTCCTTCAGGTTTGTCGACATTCTCTGATAGTGCAGTTGAACCAGCAGTGACCCCAAATTTGGTCGCCGAGAGCAGTATGAATGCATTAGACTTGACTTTTAGTCGGCTGGATATAAAGGAGGATCTCCATCGTATATCGCCTCCAAGTGTCCTGGATGGTGGAGTAAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTCAGACGCGGGAAAGCTGAAAAAGATGCCATTGAAGCTATACGCCGGGCTAAAGTTTCCGAAAGCTTATATACAGAGGAGTTGAATCAGAGGAAAATGGTGGAGGAAGAACTAGAAAAGGAAAAAGAAGAAGTTGAGAGTGTGATGAGGCAGAGAGACAAAGTTAATGAAGAACTCCAACTTGCCCTGGATCTGAAGTCATCACTAGAGAGTCAACTTGCATCGTCTGAAGTTATGATACAGGAGTTGGAACAGAAGATTATATCGGCTGTGGAACTGTTACAAAGCTACAAGAATGAACGAGATGAGTTGCAGATGCAACGCGATAATGCATTGAGAGAGGCTGAAGATCTGAGGAAAAAACAAGGCGAGGGCTCGAGCTCCTACGTTGCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTGAAGAAGCAACAAGTAACTTCAATCCATCCCTAAAGATCGGAGAAGGTGGATATGGAAATATATTTAAAGGTCTCCTCCGTCACACCGAAGTTGCTATAAAAGTGTTGCACGCCAACAGCATGCAAGGACCATTGGAGTTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCATCCCAATCTGATCACTCTTATAGGAGCCTGTCCAGAATCTTGGTCTCTTGTCTATGAGTATTTACCAAATGGAAGTCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCATTATCATGGCAAACGCGGATTCGTATTGCTGCAGAACTCTGCTCCGCTCTTATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTACATGGTGACTTGAAACCCTCCAATATCATCCTAGATGCAAACCTTGTCAGTAAGCTTAGCGACTTTGGAATCTGTCGCATATTATCAAATTACGAGAATTCTAGTAATAATAACACACTGTTTTGGAAAACCGATCCAAAAGGGACTTTTGTCTATATGGATCCGGAATTCCTTGCTTCCGGTGAACTCACTCCAAAGTCAGACGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACCGGGAGACCAGCTTTGGGAATAACTAAGGAAGTGAAATATGCCGTAGATACCGGAAAGTTGACATCTTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAGCAGTTGGCTCACTTGGCTTTGCGGTGTTGTGAGATGAATAGGAAGAGTCGTCCGGACCTTCATTCAGATGTCTGGAGGATATTGGATGCAATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGTCTAAGTTCTGAAGGGCCTCACCAACCTCCTTCATATTTTATCTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCGGAGGCTATCCGAGGATGGCTCGACAGTGGTCATGACACTTCACCGATGACAAATAGTACGCTTTCACATCAGAATCTTGTCCCCAACCGCGGTCTTCGCTCCGCGATCCAGGATTGGCTTCAAAGCCACTGA 2622 0.434 MAIQRNGSVSSVREVGGEIEEEPNTGVVNEAIYVAVSKDVKESKLNLIWAIQNSGGKKICILYVHVPATMIPLMGAKFPASSLKDQEVQAFREIERQNMHKTLDEYLRICQRMGVRAEKLHIEMDNIEKGIIELISQYGIRKLIMGAASDKNYSRRMMDLRSRKAIYVCEQAPASCHIQFICKGHLIHTRDRSLDERNVEIASPLTPQVPNSVRSLRSQSITLGQNHRTDSSSSIQELFRRARSANDVQRASISSPNDTEGFSTPSNRRGTEVSSDDSDTISRTSPSGLSTFSDSAVEPAVTPNLVAESSMNALDLTFSRLDIKEDLHRISPPSVLDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKVSESLYTEELNQRKMVEEELEKEKEEVESVMRQRDKVNEELQLALDLKSSLESQLASSEVMIQELEQKIISAVELLQSYKNERDELQMQRDNALREAEDLRKKQGEGSSSYVAQLFSEFSFSEIEEATSNFNPSLKIGEGGYGNIFKGLLRHTEVAIKVLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNNTLFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLAHLALRCCEMNRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1989 873 PANTHER U-BOX KINASE FAMILY PROTEIN 23 872 - -
Tpr6g1989 873 MobiDBLite consensus disorder prediction 247 296 - -
Tpr6g1989 873 ProSiteProfiles U-box domain profile. 802 873 IPR003613 GO:0004842|GO:0016567
Tpr6g1989 873 SUPERFAMILY RING/U-box 797 872 - -
Tpr6g1989 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Tpr6g1989 873 SUPERFAMILY Protein kinase-like (PK-like) 490 773 IPR011009 -
Tpr6g1989 873 SMART serkin_6 515 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1989 873 Gene3D Phosphorylase Kinase; domain 1 500 587 - -
Tpr6g1989 873 Gene3D HUPs 31 177 IPR014729 -
Tpr6g1989 873 Pfam U-box domain 804 873 IPR003613 GO:0004842|GO:0016567
Tpr6g1989 873 PANTHER OS02G0152300 PROTEIN 23 872 - -
Tpr6g1989 873 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Tpr6g1989 873 CDD RING-Ubox_WDSUB1_like 807 848 - -
Tpr6g1989 873 MobiDBLite consensus disorder prediction 245 296 - -
Tpr6g1989 873 ProSitePatterns Protein kinases ATP-binding region signature. 521 542 IPR017441 GO:0005524
Tpr6g1989 873 Coils Coil 341 365 - -
Tpr6g1989 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 873 IPR013083 -
Tpr6g1989 873 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 157 - -
Tpr6g1989 873 ProSiteProfiles Protein kinase domain profile. 515 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1989 873 SMART Ubox_2 806 869 IPR003613 GO:0004842|GO:0016567
Tpr6g1989 873 Coils Coil 390 487 - -
Tpr6g1989 873 Pfam Protein kinase domain 519 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1989 873 CDD STK_N 32 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1989 Tpr-Chr6 21561519 21567778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1989 19 873 U-box Gene Family AT2G45910 55.776 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tpr6g1989 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1989 - - gmx:100807515 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1989 6 21561519 21567778 Tpr5g1285 5 25287078 25294627 PCT