Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1979 ATGTTGGGTAATGAGCAACCTTTGGATTTGTATAAGCTGTTTATGGTGGTGAAGGATAAAGGTGGTTATGATGTTGTTTGTAAGAACAGGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGCGAAGGTTGGTTCATCTGTTGAACTTGTTTATAGTAAGTATTTGAGTACTTTAGAGACGCCTTTGAGGAAACTTGTTGATGGTGAGTTTCCTAAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGTGAGCGTTTAATGGAGTTGCAAGCTGAATTCTTCCTGGATGATTATGGTGAGGAAGATGCTGGGGATAGTGTATATGAATGTAGGAGGAAGTTGTGTAATAGAGTGAAGGGCGTGAAGGGTGTCAATCAAGAGTTGAATGCAGTCGAACTCGAAAGGGTATACGACTACATAGACGGGAAGAAGTTGTGTGGTACTAATAGAGTGAAGGATGTGAATCTTGAGTCTAATGCAGCCAAGAAAGTTCATAATAGAGGACTTGTTGGTGTGCATATGCAGGATTGTAAGAAGAACGAGACTAGTCTCAGAAAGTTGGTTAACCATAATGCTGTAACGGAAATAATGGAAGGGTTTGATGGGGGCAAAATATTAGCAATGGATGATGTATCCGATGCAGCAAACAGCATGCCCGGATTGTCTGATGGAAGCAAGAGTTGTGCTAATGATGACGCTAATGATAGTGGCGACGATGTCTTGGTGTTGGAACCATCTAGTGTTAATAGAGAGAGCTTTGGTCGTAAGAGGAAGAGAGACTCGATGACAGAAATGCTAAGTTGGGTTACTAGCACTGCAAAGAATCCTTGTGATCCAGTGATAGGTTCAATGCCTGAAAAGCCAAAGTGGAAGTCTTACGGTAATCAAGAGACCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAGAGATTTTGGATCAAGCTGTGAAAAACCCAGTTGGCTGGCTCAGAGGATGCATCCTTGTATGTATGATGATAACCTCGGGACAAATTACAATCTTAGACAAAGGATCAAATGTGACAATGGACTTGTAGCTGGAAAATCTTCATCTGCTTTGCAAAGAACACCAAGATCTGATACTGAAAATAGTGCCAAGAAAAAGTTACTTGACTCCGGTGATTCACAATCAATTCTTGATACACCACCCACCGTGAACATCCCTCTCGGGCCAAACCATCAAGTTGAAGTGGCCGAATGGACTGGCACAACTCACGAGAGTGATTATAAGTGGTTAGGAACCCAAATATGGCCACTAAAAACTGTAAAATCCAAATTTTTGGAATGGGAGCATGTAGGACAGGGTAGACAAGACTCATGTAGTTGCCAAGTACAAGGTTCAGTTGAGTGTGTTCGATTTCATGTTACTGAGAAAAGGTCTAAACTCAAGCTGGAGTTAGGTGTGGCCTTCTACCAGTGGAGTTTAGACAAGGTAGGTGAAGAGGTACGGAGATGGTGGACGCAGCAAGAAGAGAAGAAGTTCAAAGATGCAGTGAAATTAAACCCTGCTTCGCTTGATAGATGTTTCTGGGATAATATTTTCAAATCTTTTCCTAAGAAAAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTGTTTCTTTTGCAGCGCAGAGCATACCAGAACAGGCATACTCCTGATAACATTGACAGTGATGATGAAGAATCAGAATTTACATCATTGAGGGGTATTTTTGGACATAAAATTAATAAATCAAACAGCATCACCATATTATCTCCTAAGAAGCCACAGACAAAGCCACATACAAAAGGAAGATAG 1815 0.4105 MLGNEQPLDLYKLFMVVKDKGGYDVVCKNRLWDLVGEEYGLGAKVGSSVELVYSKYLSTLETPLRKLVDGEFPKCDLVDDRVKFGERLMELQAEFFLDDYGEEDAGDSVYECRRKLCNRVKGVKGVNQELNAVELERVYDYIDGKKLCGTNRVKDVNLESNAAKKVHNRGLVGVHMQDCKKNETSLRKLVNHNAVTEIMEGFDGGKILAMDDVSDAANSMPGLSDGSKSCANDDANDSGDDVLVLEPSSVNRESFGRKRKRDSMTEMLSWVTSTAKNPCDPVIGSMPEKPKWKSYGNQETWKKVLLFREAAFLKRDFGSSCEKPSWLAQRMHPCMYDDNLGTNYNLRQRIKCDNGLVAGKSSSALQRTPRSDTENSAKKKLLDSGDSQSILDTPPTVNIPLGPNHQVEVAEWTGTTHESDYKWLGTQIWPLKTVKSKFLEWEHVGQGRQDSCSCQVQGSVECVRFHVTEKRSKLKLELGVAFYQWSLDKVGEEVRRWWTQQEEKKFKDAVKLNPASLDRCFWDNIFKSFPKKSRENLVSYYFNVFLLQRRAYQNRHTPDNIDSDDEESEFTSLRGIFGHKINKSNSITILSPKKPQTKPHTKGR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1979 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 598 - -
Tpr6g1979 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 598 - -
Tpr6g1979 604 CDD SANT 498 545 IPR001005 -
Tpr6g1979 604 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Tpr6g1979 604 MobiDBLite consensus disorder prediction 361 387 - -
Tpr6g1979 604 SMART bright_3 2 66 IPR001606 GO:0003677
Tpr6g1979 604 Pfam Myb-like DNA-binding domain 498 544 IPR001005 -
Tpr6g1979 604 SMART sant 494 547 IPR001005 -
Tpr6g1979 604 CDD ARID 6 61 - -
Tpr6g1979 604 Gene3D - 1 70 IPR036431 GO:0003677
Tpr6g1979 604 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Tpr6g1979 604 SUPERFAMILY ARID-like 5 67 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1979 Tpr-Chr6 21439879 21445620 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr6g1979 ARID 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1979 - - mtr:MTR_7g078120 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1979 6 21439879 21445620 Tpr5g1307 5 25649814 25653875 PCT