Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1978 ATGGATAGCACAAATAGTATGGATACTTGTGTTGGTTTTGATGGTGAAGCTAGTGGAGTTGATAGCTATAATGGTGAACAAGAAAGTTGGGAGCCTGCAACAGGGATGTCTTTTTCTTCTATAGATGAGGTGAAATCATTTTATGGAAAGTATGCTTCAATAAAAGGTTTTGGATGGAAGATTAGAACGTCAAGGAAAGGAGAGGATGGGAAGTTAAATTACTTAATGCTGTCATGCTCAAGAGAAGGACGTCGTGGGTCAAAAATACCATGTACATTGAAGACACTTCCAACTAAAGTGAAAAATTGTCCTTCAAAGATTACTATTAAGTTGGCAAAAGATGAACTATGGTATATTAAAAAGTTTGAACCTAACCACTCTCACACAATTAGCCCCACTAAGTCAAGGTTATTCAAGGCAAACAAAAATCTGAGCATGCATGTAAAGAGAACAATTCATATCAACGATGACGCAGGGGTGAGGATCAACAAGACCTTTCAGACTCTTGTTCGAGATGCCGGAGGTTATGAAAATGTAGCATTTTGTGAAAGAGATGTTAGGAATTTTGTTAACAAGGAAAGACGTGTGATTGGAAAAGACGGAGATGGCAAAGCATTGATAAGCTATTTTTGTCAAATGAGGGAGCAAAATACAAATTTCTTCTATGATATAGATTTGGATGATGATTTTCATGTACGAAACGTGTTTTGGGTTGATGCAAGAAGTAGAGCTGCATATGAATCTTTTGGAGATGTTGTTACTTTTGATACAACATATTTGACCAATAAATATGACATGCCTTTTGCTGCATTTGTTGGTGTGAATCACCATGGTCAATCAACTTTACTTGGATGTGGTCTACTTTCAGCTGAAGACACGGAATCATTTGTGTGGCTTTTTCAATCTTGGCTTCGTTGTATGTTAGGAAAGGCCCCTGCAGGTATTGTCACTGACCAATGCAAGGCTATGCAAAATGCCATCGAGTTAGTATTCCCTACTACTAGACATAGGTGGTGTTTGTGGCATATAATGAAAAAAATCCCTGAAAAGCTAAGTAGATATGATGAATATAAAAATATTACATTTGCAATGAAAGAATCGGTTTATGATACAATCACACCAACTGAGTTTGAAGAAAAATGGTGTTCTTTTGTCAACAAATTTGAGCTGGAACATAATGTTTGGTTGAGTGGATTGTACAAAGAGTGTCATAGATGGGTGTCAATTATGTTGAAGAAATATTTTTGGGCTGGTATGTCGACAACACAACGAAGTGAGAGCATACATGCTTTCTTTGATGGATATATCAATTCGACAACCACTCTGCATCAATTTGTAAAGCAATATGATAATGCTCTTAGAAGTAGAGCAGAAAAAGAATTTGAAGCTGATTTTCAATCAATGGATACAATTATTCCTTGTGGGTCAAACTCGTTGATCGAAAAGCAATTACAAAATTAA 1461 0.3628 MDSTNSMDTCVGFDGEASGVDSYNGEQESWEPATGMSFSSIDEVKSFYGKYASIKGFGWKIRTSRKGEDGKLNYLMLSCSREGRRGSKIPCTLKTLPTKVKNCPSKITIKLAKDELWYIKKFEPNHSHTISPTKSRLFKANKNLSMHVKRTIHINDDAGVRINKTFQTLVRDAGGYENVAFCERDVRNFVNKERRVIGKDGDGKALISYFCQMREQNTNFFYDIDLDDDFHVRNVFWVDARSRAAYESFGDVVTFDTTYLTNKYDMPFAAFVGVNHHGQSTLLGCGLLSAEDTESFVWLFQSWLRCMLGKAPAGIVTDQCKAMQNAIELVFPTTRHRWCLWHIMKKIPEKLSRYDEYKNITFAMKESVYDTITPTEFEEKWCSFVNKFELEHNVWLSGLYKECHRWVSIMLKKYFWAGMSTTQRSESIHAFFDGYINSTTTLHQFVKQYDNALRSRAEKEFEADFQSMDTIIPCGSNSLIEKQLQN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1978 486 Pfam FAR1 DNA-binding domain 46 131 IPR004330 -
Tpr6g1978 486 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 485 IPR031052 GO:0006355
Tpr6g1978 486 PANTHER OS03G0843700 PROTEIN 18 485 - -
Tpr6g1978 486 Pfam MULE transposase domain 252 346 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1978 Tpr-Chr6 21434113 21436027 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr6g1978 MULE 6.5e-35 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1978 - - gmx:102667848 620.928