Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1976 ATGGGAGGTTGCTGTTGTTCCGCCAGAAAACATCATTTGCAAGGAACACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACCTCTAATGACGGTACCGCTGCTGGATATCTGGTTGGGTTGAACCTAGAAGCATCCATACCTGATACTTTCCGCTCACCTCCTGTTCCACTTCCTTACGACATTGTCTTCGGAGGTTCTGCGTCAACTGATTCTGAGTCTGGCAGAGAAACAGTTAGTGTTAGTAGTTTTGAAACTTCAATTACACACGATGATATTGAAGAATCGGATTGTAAAGCTCAAACCAAATGTGCACCTATATCTCCAAGGAAGGTAGAACTATCAAAATCAAATGGAACTGAAGTTTTGGTAACCGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGACGAGAATCCTAAAAATCTGACAAAATGTGAACATCATTTTCATCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGACCAGGAGATGATATTTTGA 549 0.4117 MGGCCCSARKHHLQGTPVYYYCPPTFEERESLTSNDGTAAGYLVGLNLEASIPDTFRSPPVPLPYDIVFGGSASTDSESGRETVSVSSFETSITHDDIEESDCKAQTKCAPISPRKVELSKSNGTEVLVTEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1976 182 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 182 - -
Tpr6g1976 182 SMART ring_2 136 176 IPR001841 -
Tpr6g1976 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 182 - -
Tpr6g1976 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 181 IPR013083 -
Tpr6g1976 182 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Tpr6g1976 182 Pfam Ring finger domain 135 176 IPR001841 -
Tpr6g1976 182 SUPERFAMILY RING/U-box 130 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1976 Tpr-Chr6 21418213 21421516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1976 1 182 C3H Transcription Factor Family AT4G00335 56.989 6.71e-70 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1976 - - gmx:100812687 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1976 6 21418213 21421516 Tpr5g1310 5 25692939 25698296 PCT