Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1973 ATGGGATTCCCCGTAGGGTACCCTGAAGTATCCGTCTCCAACCTCTTCCTCTACACACTCCCTCTCCTTGCCTTTCTAAGATCCATAGCCATAACCTTCCTTTCTCTCCTCCATCTCTCCGACATCCTCGACACCGATTTCTCCGTCATATCTTCATCTGAATCTCACCTCCACCGTCCCACTCTCTCTGCAATCCTCATCCGTCAATTCCTACCTGTAGTCAATTTCAGTGTCATCGCCGGAGACTCGCCGCCGGCAGCGGAGTGTGCGGTGTGTTTAAACGAATTTGTCGGAGAAGAAGAGATTAGGTGTATGGCGAACTGTAGACATATTTTTCATCGGACGTGTGTTGACCGTTGGATTGATCATGATCAGAAGACGTGTCCACTTTGTAGAACTCATTTTGTACCTTATCATAAAATGGAAGATTATAATCAACGGTTGTGGGCTGCTTCTGCATCTGATGATGATGATTATGATGTTTCTCTTTTTTCTCTACATGATGACCACATTGCTACTTCTTCATTCTGA 531 0.4557 MGFPVGYPEVSVSNLFLYTLPLLAFLRSIAITFLSLLHLSDILDTDFSVISSSESHLHRPTLSAILIRQFLPVVNFSVIAGDSPPAAECAVCLNEFVGEEEIRCMANCRHIFHRTCVDRWIDHDQKTCPLCRTHFVPYHKMEDYNQRLWAASASDDDDYDVSLFSLHDDHIATSSF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1973 176 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 171 - -
Tpr6g1973 176 Pfam Ring finger domain 88 132 IPR001841 -
Tpr6g1973 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 171 - -
Tpr6g1973 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 137 IPR013083 -
Tpr6g1973 176 SMART ring_2 89 131 IPR001841 -
Tpr6g1973 176 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Tpr6g1973 176 SUPERFAMILY RING/U-box 88 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1973 Tpr-Chr6 21382888 21383633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1973 1 154 C3H Transcription Factor Family AT1G63840 43.949 1.11e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1973 K16281 - gmx:100813224 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1973 6 21382888 21383633 Tpr5g1322 5 25857291 25858257 PCT