Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1971 ATGGAAGAAACAGAGGAGAGGGAGGGAAATGCAGAACAAGAAGAAGAAGAAGAAGAATGCGACGCTGTTGCGGTGGTGGGGGAGATCCAACATGTCATCGAATCGGTGGTTCAAGTCGGCGAATATCGAAGAACACAGAGAAAAGAATCACACGTTCTTGCTCGTCGTTTCAAACACATTTTACCTCTTATGGAAGACCTTCGTGATCTTCAAAATCCTGTTCCTCAAAACGGTGTCGTTTGGTTGAGAAACCTAAGGGATGCGCTTTTGTTGGCAAAAGAATTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTGGCATTGGAGGGGGAGGCGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGCCAAGCTTTTGATGGTGTGCCTTGTGATGAATTGGGGATTTCTGATGAAGTAAAGGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCTGATAGTGCTATTGTTGAAAGGCTTGCAATAAAGTTGGAGCTTCGCAGTTTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTGGCCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCGCTATCGTCCTTGATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATAAAACCTGTCCAAAGACAAGGCAACCTCTAGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGTTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTACACTTCATCATGTCAAGAAGGCTCTTCTTCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAGGCAGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAACAGAGTTTTAGTCGCCGAGCATGGAGGAATACCACCATTAGTACAACTACTATCCTATCCAGATTCAAAAATAAAAGAACATGCTGTTACCGCACTTTTGAATCTATCAATTGATGAAGATAACAAGAAACTTATATCACAAGAAGGTGCTATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCAACCTTTGGTAAACTTGTTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACAATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTTACACCTTTACTTGAACTGTTACAGGACACAAACTTGGGAATGATTGATGAAGCACTCTCAATTTTGTTGTTACTTGTGTTGAATCCTGAAGGGAGACAAGAGATTGGACACTTATCTTTCATTGAAATTCTTGTTGGCTTTATTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCTTCTTTCACTTTGGCAGCACTTCAGTTTGGAGTTTATGACCATTTAATTCAGATGAAGCAAACTGGTACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGAGCAAATTTAA 1929 0.3904 MEETEEREGNAEQEEEEEECDAVAVVGEIQHVIESVVQVGEYRRTQRKESHVLARRFKHILPLMEDLRDLQNPVPQNGVVWLRNLRDALLLAKELLKLCSQGSKIHLALEGEAVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELRSFEDLEVETVAVGNLVRERKGQQAESTQKIIGLLNRFKRVAGMEETAIVLDGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKIYTSSCQEGSSSTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISQEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEIVGISNGIQPLVNLLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLELLQDTNLGMIDEALSILLLLVLNPEGRQEIGHLSFIEILVGFIREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYDHLIQMKQTGTNRAQRKANAILDLISKSEQI* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1971 642 PANTHER U BOX DOMAIN-CONTAINING 19 640 - -
Tpr6g1971 642 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Tpr6g1971 642 Coils Coil 1 21 - -
Tpr6g1971 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Tpr6g1971 642 Pfam Armadillo/beta-catenin-like repeat 392 431 IPR000225 GO:0005515
Tpr6g1971 642 Pfam Armadillo/beta-catenin-like repeat 475 513 IPR000225 GO:0005515
Tpr6g1971 642 SUPERFAMILY ARM repeat 360 636 IPR016024 -
Tpr6g1971 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Tpr6g1971 642 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 19 640 - -
Tpr6g1971 642 Pfam U-box domain 268 338 IPR003613 GO:0004842|GO:0016567
Tpr6g1971 642 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Tpr6g1971 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515
Tpr6g1971 642 Gene3D - 345 641 IPR011989 -
Tpr6g1971 642 CDD RING-Ubox_PUB 272 314 IPR045210 -
Tpr6g1971 642 SUPERFAMILY RING/U-box 267 344 - -
Tpr6g1971 642 Coils Coil 140 160 - -
Tpr6g1971 642 SMART arm_5 515 555 IPR000225 GO:0005515
Tpr6g1971 642 SMART arm_5 556 596 IPR000225 GO:0005515
Tpr6g1971 642 SMART arm_5 474 514 IPR000225 GO:0005515
Tpr6g1971 642 SMART arm_5 433 473 IPR000225 GO:0005515
Tpr6g1971 642 SMART arm_5 392 432 IPR000225 GO:0005515
Tpr6g1971 642 Gene3D - 20 133 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1971 Tpr-Chr6 21358667 21361653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1971 1 642 U-box Gene Family AT5G42340 59.009 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1971 - - cam:101489704 1035.79