Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1970 ATGGCTAATGCTACCTTCACAAGTCATCATCACGGACAACTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCTGATAGTGCTATTGTTGAAAGGCTTGCAATAAAGTTGGAGCTTCGCAGTTTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTGGCCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCGCTATCGTCCTTGATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATAAAACCTGTCCAAAGACAAGGCAACCTCTAGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGTTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTACACTTCATCATGTCAAGAAGGCTCTTCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAGGCAGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAACAGAGTTTTAGTCGCCGAGCATGGAGGAATACCACCATTAGTACAACTACTATCCTATCCAGATTCAAAAATAAAAGAACATGCTGTTACCGCACTTTTGAATCTATCAATTGATGAAGATAACAAGAAACTTATATCACAAGAAGGTGCTATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCAACCTTTGGTAAACTTGTTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACAATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTTACACCTTTACTTGAACTGTTACAGGACACAAACTTGGGAATGATTGATGAAGCACTCTCAATTTTGTTGTTACTTGTGTTGAATCCTGAAGGGAGACAAGAGATTGGACACTTATCTTTCATTGAAATTCTTGTTGGCTTTATTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCTTCTTTCACTTTGGCAGCACTTCAGTTTGGAGTTTATGACCATTTAATTCAGATGAAGCAAACTGGTACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGAGCAAATTTAA 1527 0.3785 MANATFTSHHHGQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELRSFEDLEVETVAVGNLVRERKGQQAESTQKIIGLLNRFKRVAGMEETAIVLDGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKIYTSSCQEGSSTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISQEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEIVGISNGIQPLVNLLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLELLQDTNLGMIDEALSILLLLVLNPEGRQEIGHLSFIEILVGFIREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYDHLIQMKQTGTNRAQRKANAILDLISKSEQI* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1970 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 311 IPR000225 GO:0005515
Tpr6g1970 508 SMART Ubox_2 138 201 IPR003613 GO:0004842|GO:0016567
Tpr6g1970 508 SMART arm_5 299 339 IPR000225 GO:0005515
Tpr6g1970 508 SMART arm_5 422 462 IPR000225 GO:0005515
Tpr6g1970 508 SMART arm_5 340 380 IPR000225 GO:0005515
Tpr6g1970 508 SMART arm_5 381 421 IPR000225 GO:0005515
Tpr6g1970 508 SMART arm_5 258 298 IPR000225 GO:0005515
Tpr6g1970 508 Gene3D - 345 507 IPR011989 -
Tpr6g1970 508 Gene3D - 228 344 IPR011989 -
Tpr6g1970 508 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 11 506 - -
Tpr6g1970 508 PANTHER U BOX DOMAIN-CONTAINING 11 506 - -
Tpr6g1970 508 CDD RING-Ubox_PUB 139 181 IPR045210 -
Tpr6g1970 508 SUPERFAMILY ARM repeat 228 502 IPR016024 -
Tpr6g1970 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Tpr6g1970 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Tpr6g1970 508 SUPERFAMILY RING/U-box 134 211 - -
Tpr6g1970 508 Pfam Armadillo/beta-catenin-like repeat 341 379 IPR000225 GO:0005515
Tpr6g1970 508 Pfam Armadillo/beta-catenin-like repeat 258 297 IPR000225 GO:0005515
Tpr6g1970 508 Pfam U-box domain 135 205 IPR003613 GO:0004842|GO:0016567
Tpr6g1970 508 ProSiteProfiles U-box domain profile. 134 208 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1970 Tpr-Chr6 21330750 21336802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1970 20 508 U-box Gene Family AT5G42340 67.894 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1970 - - cam:101489704 841.647