Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1965 ATGTCGATCTTCGACGGAGCTTTCATCAACACACAGCTCTCCAAACACACATCGATCTTCGGTCTCCGTTTATGGGTTGTAATCGGAATCTTAATCGGGGTTGTAATCGTCTTCATCCTCTTCTTAATCTCCCTTTGTGTAGTTTCTCGCCGGCGCCACCGCCGTACCGACGACTACAAAATCACCGGAGCTACTCCAGCTAAAGAAATCCAAGAGATCGTGCATATTCCAGGACCCCACATGCTCCGGCGACCAGCTCCGGCGAAAGTACCGGAGATCCACGTGGATATTGGAAGACAAGAACACCGTGTGGTTGTTAAGTCAGATAGGGTTTCAAGTGGTGAGAGTAAAGGTACAGTTGGAAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGAATTGGACCTGAAGTATCACATCTTGGATGGGGAAGATGGTATACTTTGAGAGAGCTTGAAGATGCTACTGGTGGATTGTGTCCAGAAAATGTTCTTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTGTTCTCACTGATGGTACTAAAGTTGCTGTCAAAAATCTCTTGAATAACAAGGGCCAAGCTGAAAAAGAATTCAAAGTCGAGGTAGAAGCAATTGGTCGAGTACGGCACAAAAATCTTGTTAGGTTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTGGACAATGGCAATTTAGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAATGTTATATTAGGAACAGCAAGAGGGTATAATATTTATGATTTTTCTAAACTAATTGCAATTCATGTCGATTCAAGAATGTCGTTGTCACCGTATTTTATTTTGTATCTTCTCAGATTGGCCTATCTTCACGAAGGTCTTGAACCTAAGGTTGTTCACCGAGATGTAAAATCAAGCAACATCCTCCTCGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCTGAGAATAGTTATGTCACGACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACGGGAATGCTTACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAGGAAGTAGTCGATCCTAAGCTACCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTCTATTAATTTCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTCATTCACATGCTCGAGGCAGACGACCTGTTATTCCATAATGATCGCAAAACTGGAGGGGAGTCTTCGCGATCCCTTCATGATTTTCAACAAGAGCACGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGTATAAGTGTTGAAACTGAACATGGTAGTGCTAGAAATAATTATCAGTCTACTAGGGGGAGATGA 1575 0.4317 MSIFDGAFINTQLSKHTSIFGLRLWVVIGILIGVVIVFILFLISLCVVSRRRHRRTDDYKITGATPAKEIQEIVHIPGPHMLRRPAPAKVPEIHVDIGRQEHRVVVKSDRVSSGESKGTVGSGCETTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGYNIYDFSKLIAIHVDSRMSLSPYFILYLLRLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPEMPSSKALKRALLISLRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLHDFQQEHEDSNLDKRTDEGISVETEHGSARNNYQSTRGR* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1965 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Tpr6g1965 524 Pfam Protein tyrosine and serine/threonine kinase 167 464 IPR001245 GO:0004672|GO:0006468
Tpr6g1965 524 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524
Tpr6g1965 524 MobiDBLite consensus disorder prediction 510 524 - -
Tpr6g1965 524 MobiDBLite consensus disorder prediction 477 524 - -
Tpr6g1965 524 SMART serkin_6 163 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1965 524 MobiDBLite consensus disorder prediction 477 509 - -
Tpr6g1965 524 Gene3D Transferase(Phosphotransferase) domain 1 239 478 - -
Tpr6g1965 524 PANTHER OS01G0323000 PROTEIN 1 275 - -
Tpr6g1965 524 PANTHER OS01G0323000 PROTEIN 304 516 - -
Tpr6g1965 524 ProSiteProfiles Protein kinase domain profile. 163 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1965 524 CDD STKc_IRAK 169 465 - -
Tpr6g1965 524 SUPERFAMILY Protein kinase-like (PK-like) 142 465 IPR011009 -
Tpr6g1965 524 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 275 - -
Tpr6g1965 524 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 304 516 - -
Tpr6g1965 524 Gene3D Phosphorylase Kinase; domain 1 140 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1965 Tpr-Chr6 21278905 21283426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1965 132 507 Receptor kinase-like Gene Family AT4G02010 39.535 4.97e-86 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Tpr6g1965 PK_Tyr_Ser-Thr 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1965 - - gmx:100817295 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1965 6 21278905 21283426 Tpr5g1340 5 26203747 26207248 PCT