Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1963 ATGGCCACAACTCCTTCTCTTCTACACTCATCTGGTTCTTCTTTTCTCCCTCAATTTCGAACTTTTCCAACCCAATTTTCTTCTTCTTCATTGTTCTCTCATGGAAGTAGCAGGCATCGAAGTTCAGTGGTGTCCGTCAAAGCCATAGCTTCTGGGGCTGTATTGGTAGAGAAGTCTGAAGCAGAGCAGGTTTATAGGCTCAAAACTACCTACAATGAGAAAATTGTTCCTTTGCTCATCGAAGAATTCTCTTACACTAACATTCATCAGGTTCCTAAAGTTAATAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATTAATGATCTAGCACTGATCACTGGACAGAGACCTGTTAAGACTCGGGCGAGGAATTCTGTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGGCTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTTCAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTTTTGGTACACCTAGAGGAATGGATGTCTGCATCTCAACAACTGCTAAAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAGAATACCCAAATAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAGGAAGTAA 819 0.4151 MATTPSLLHSSGSSFLPQFRTFPTQFSSSSLFSHGSSRHRSSVVSVKAIASGAVLVEKSEAEQVYRLKTTYNEKIVPLLIEEFSYTNIHQVPKVNKIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNFNIGIKDQTVFPELKSGFGTPRGMDVCISTTAKTDQEGQKLLALMGMPFREGVENTQIVRKKKLKSHHFDAKSKGRGDRARK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1963 272 ProSitePatterns Ribosomal protein L5 signature. 120 136 IPR020929 GO:0003735|GO:0005840|GO:0006412
Tpr6g1963 272 Hamap 50S ribosomal protein L5 [rplE]. 64 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Tpr6g1963 272 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 63 241 - -
Tpr6g1963 272 Pfam ribosomal L5P family C-terminus 147 239 IPR031309 -
Tpr6g1963 272 Pfam Ribosomal protein L5 87 143 IPR031310 -
Tpr6g1963 272 SUPERFAMILY RL5-like 66 240 IPR022803 -
Tpr6g1963 272 Gene3D - 58 241 IPR022803 -
Tpr6g1963 272 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 63 241 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1963 Tpr-Chr6 21261211 21263536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1963 93 198 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 31.132 8.28e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1963 K02931 - gmx:100800193 387.882