Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1954 ATGGTTGATGCTTATAGCAATTTAAGTGATGTTCGTGTTGGAAATTTTCCATGGTGTTTGAAGGTTCGTGTGATTCGTCTTTGGGTGGTCAAATCCAATTTAATTTCTGGGCAAGAAAATTCAATTGAGCTTGTGCTTCTTGATGAAAAGGGATGCAAGATACATGCTACTGTCCGGAGACACTTGATTCCTTTGTTTAAAGCTGTTATTATTGAAGGTGAAGTTTATACTTTATCTGCGTTTTCTGTTGTTGATGCTTATGGATTATGCAGGCCAACTAGGCATCCTTGTCGGTTGTTTTTTCATTCTACTACTATTTTGGAGAAAATGGTGTGTCGAGCAATCAAAATGAATGGATTGTCGTTGGTGGACATTGGCCAAATTAATTCTCATTCATGTGATAGTAATTATTTAGTTGATTTTATGGGGGTAATGACTGGTATATCTTCCCAGAATGAGTTTCTTAAAGATGGTCAACGTGTCAAAATGATTGTTGTTGAGATATCTGATCACAGAGGTTTCTGTCATGTTGTTCTGTTTGGCGAAATTGTTGATTACTTGGTTCAGATGATGACCACTCTCGACGGAGGTCTACCGGTGGTTGTTATTCAATTTGCCAAGATCAGATTTTTTCGTGGTCGTGTTCTTTTACAGAATATTCAAAATCTAACTAGGATGTTGTTTAATCCTCCAGTTGATGAATCTGTACTTTTAGGAAGAAGGTTATCTAAAATGCGAGGTGGACCTGCAATGACTGTTCCGTTAATTGGTCCTCCCGTTAAACCTTCGGTCGTGGTTGATTTTCTTCGTCTATATCCAAAGAAAACTATTGCTGAGTTGAAATCTACATCTGCTGATGGGCCATTTATTGTATCTGGTGTTGTGGATGGTTTGGTAATTGGAGAAGATTGGTGGTACCCTTCGTGTCGTTGTTCAAAACGTTTAATAATTAATGCTGGATATTATTACTGTAGAGGTTGTTCAAAGCATGTGTTTGAATTTGTCCCTAGGTTTCGCGTCAAAATACATGTTACCGATGGCATTGATGATGCCATGTTTGTTCTTTCTGATGATGATGTCCGTTACCTGACCCGTACCAAGTGTAGCATTCAGCTTTCATCATCCAAGCAGGTTTTGGAAGGAATTAATCCACCTAGTGCTTTGATGAAAATTGAAGGTTTAAAATTGTTGTTTAAGATTGTCATGGTGTCTTCTTTGAATCCTATATACAAAGGTGCTTTCAAAGTTTCTAGGGTTTGTCTTGATCCAGATATTTTCAATGCTTTTTCTCTTAAGGGAACACGCCATACTCCTGCAAAGGTTTATAGGCCAGTAATGAGCGAGGTTGTCTATCCCTCGGGTTTGATTGAAGAGATCAATCAACATGGGGAATATTTATCAAACAAAAGATTGTCTGGTTCATTTGATAATACACTTGGGGAGGAAATTGCAGATCATCACAAGCGATCTAGAGATTGTTGA 1482 0.3799 MVDAYSNLSDVRVGNFPWCLKVRVIRLWVVKSNLISGQENSIELVLLDEKGCKIHATVRRHLIPLFKAVIIEGEVYTLSAFSVVDAYGLCRPTRHPCRLFFHSTTILEKMVCRAIKMNGLSLVDIGQINSHSCDSNYLVDFMGVMTGISSQNEFLKDGQRVKMIVVEISDHRGFCHVVLFGEIVDYLVQMMTTLDGGLPVVVIQFAKIRFFRGRVLLQNIQNLTRMLFNPPVDESVLLGRRLSKMRGGPAMTVPLIGPPVKPSVVVDFLRLYPKKTIAELKSTSADGPFIVSGVVDGLVIGEDWWYPSCRCSKRLIINAGYYYCRGCSKHVFEFVPRFRVKIHVTDGIDDAMFVLSDDDVRYLTRTKCSIQLSSSKQVLEGINPPSALMKIEGLKLLFKIVMVSSLNPIYKGAFKVSRVCLDPDIFNAFSLKGTRHTPAKVYRPVMSEVVYPSGLIEEINQHGEYLSNKRLSGSFDNTLGEEIADHHKRSRDC* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1954 493 Pfam Domain of unknown function DUF223 43 114 IPR003871 -
Tpr6g1954 493 CDD RPA1_DBD_A_like 19 106 - -
Tpr6g1954 493 Gene3D - 114 247 IPR012340 -
Tpr6g1954 493 Gene3D - 6 111 IPR012340 -
Tpr6g1954 493 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Tpr6g1954 493 SUPERFAMILY Nucleic acid-binding proteins 272 400 IPR012340 -
Tpr6g1954 493 PANTHER REPLICATION FACTOR A 1, RFA1 19 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g1954 493 Gene3D - 270 419 IPR012340 -
Tpr6g1954 493 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
Tpr6g1954 493 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1954 Tpr-Chr6 21154212 21156909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1954 18 346 Core DNA Replication Machinery Family AT2G06510 22.286 8.00e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1954 - - mtr:MTR_8g062030 358.992