Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1938 ATGCAACAACCACATTCCTCTACCGCCATTCCTTCTTCTTCCACCTCCAACGCTGAAACTTCATTATCGATCCAAAATGCTCAAGTATCGGAGAACCGTCCACGCCAGTCTCGCCGCGTGCGCATCACTTACGGCGGGAGATTCAACCGGACTATTAGTATCACCGATGACTCCGCCATTGTTAGGGATGATAAATGGTCCTGTTTAGCCGTTATCTTCAGCCTTTGGTTTTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGTGTGGCTCTAGGTCCATGTTCTTCAATTGTTTTTCATCCAAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTACAGGCAAATCCAGGACTCGTTCTATATGGTACATATCAATATCCGTCTCTTGACGTTGTTTCCACTTGGAGAGAAACTTTTAATATATCTATTCCTTATGGCTCAGAAAAGGAATGGAAATTATATCTGAATAGAGGATCTGAAGTGAATATTTCATATAGCTTGAGCTCTGAGAGCTCCTCTGTTTATCTTGTAATTGCAGAAGGAGCTGAAAGCCTCTCAGAGTGGATGGCTGACCCAACATATCCCAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACGCAGGAAATATTCAGGTCATCCAGCTATTATGTGGCATTGGGTAATTTGGAAGGGGAGGAGGTGGAGGTGGAATTAAACCTCACTGTAAAGGCCATCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTCCATGTGGTCTGAATATTTTCCTTCCTTATGGAAACACAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCAAACTGTCTTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGACTGACTATGATCATGTTTTGGGCCTTCAACGTCTTGACTAAGCTTCAGAGTGCCCATGATGATCGAGTAGAATCCAGATCTGAAGGACCGGGTCCTGATCAAGCCTCCTTGCTTTCTCGCAAATATGACGATCGTTCAAGTTGGGGTTCATCATATGATTCTTTACCAGAGGATGAGGAAGATCTTGATTTTCTCGCTGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGTCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTTTTTCTTCCATGTGGGCACTGTGTGGCTTGTTATGAATGTGGAACTAGGATAGTTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACAGTATGA 1362 0.4302 MQQPHSSTAIPSSSTSNAETSLSIQNAQVSENRPRQSRRVRITYGGRFNRTISITDDSAIVRDDKWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFHPNPVFVQYVKVENLQANPGLVLYGTYQYPSLDVVSTWRETFNISIPYGSEKEWKLYLNRGSEVNISYSLSSESSSVYLVIAEGAESLSEWMADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEGEEVEVELNLTVKAILHNTTNAYYKCALTSSPCGLNIFLPYGNTAVLVSPAPQQNTSNEEWYVKLSYGPRWLTYIFGIGGLTMIMFWAFNVLTKLQSAHDDRVESRSEGPGPDQASLLSRKYDDRSSWGSSYDSLPEDEEDLDFLAGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACYECGTRIVEAAGTCPVCRRNMKKVRKIFTV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1938 453 SUPERFAMILY RING/U-box 401 447 - -
Tpr6g1938 453 Pfam Zinc finger, C3HC4 type (RING finger) 399 447 - -
Tpr6g1938 453 ProSiteProfiles Zinc finger RING-type profile. 402 441 IPR001841 -
Tpr6g1938 453 MobiDBLite consensus disorder prediction 1 36 - -
Tpr6g1938 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 453 IPR013083 -
Tpr6g1938 453 PANTHER OS05G0521000 PROTEIN 7 453 IPR044586 GO:0004842
Tpr6g1938 453 MobiDBLite consensus disorder prediction 337 356 - -
Tpr6g1938 453 Pfam Domain of unknown function (DUF4792) 123 191 IPR032008 -
Tpr6g1938 453 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 7 453 - -
Tpr6g1938 453 MobiDBLite consensus disorder prediction 1 33 - -
Tpr6g1938 453 Pfam Domain of unknown function (DUF4793) 215 321 IPR032010 -
Tpr6g1938 453 SMART ring_2 402 440 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1938 Tpr-Chr6 21028586 21035331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1938 375 450 C3H Transcription Factor Family AT3G06140 30.263 7.74e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1938 - - gmx:100791057 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1938 6 21028586 21035331 Tpr6g1938 6 21028586 21035331 ECH