LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1913	ATGGACTCAAACTCATCGTCAACAAATTCTGATATGTCTGCCTCTTGCTCGTCCTTTCAACCATCTTCCGATCCTAACCTATTGGATTTGGGTTCTTGCAGTATCCGAAGTAATAGATATAGATATGATGTATTTATCAGTTTTAGAGGTTCTGACACTCGCAATGGCTTTGTCGGCCATCTCTACGGTCATCTAGTTAGAAAAGGTCTTATCGTTTTCAAAGATGACATAGAACTTCGGAGAGGAGAATATATTGCACCCCAACTTTTGCAAGCAATTAAAGATTCACGAGTTTCTATTGTTGTCTTCTCGAAAGATTATGCTTCCTCAACTTGGTGTTTGGATGAAATGACTGCCATTGATGAATGCCGTGCTGAACTAAGACAGACTGTTTTCCCTATTTTCTATGATGTTGATCCATCTCATGTCCGAAAACAAAATGGAGTGTATGAGAATGCCTTTGTTGTACACACTGAGTCATTCAAACATGAGCCACACAGAGTTGATGGGTGGAAGAAAGCTATGACCTATTTGGCTGGATTAGGTGGCACAGATGTCAGGAATAAGCCAGAATTTGATATGATTGAAACAATTGTTCAGGATGTAACAAACACATTGAATCCGAAATTGTCAGGGTGTTATGATCATCTTATTGGAGTAAGACCTCGTGTCGAAGCATTAGAAAGACTTTTAAACTTAAAGTCAGAGGACAATGCTTTTCGGGTTTTAGGAATACGGGGGATGGATGGCATAGGAAAAACAACTCTTGCAAATGTCTTGTATGATACAATCGCATATCAATTTAGTGCTTGTTGTTTTATTGAGAATCTTAGCACAATTTATAGGGATGGCGATGCTATTGCTGTCAAGAAACAAATTCTTCATCAAACTTTGAAAGAAAAAAATCTGGATGCATACAATCTCTCTGAAATATCTAAAATTTTAAAAAATAGGCTATATAACATGAAGGTCCTCATAGTTCTTGACGATGTTGATCAATTTGAGCAACTAGATGAATTGCACATAGATCCCAAATTACTACATCCTGGAAGTAGAATAATCATAACCACTAGAGATGTGCATATTCTTGAATTGTATGGAGCGAATATAATTCATGAGGTTGAATTGATGAATGATTATGATGCTCGGGAACTTCTATGTAGAAAAGCCTTCAAAAATGGTAATTCAAGCAATGATTATGCAGAACTTATTTCTAATGTACTAAGATACGCTCAAGGTCTTCCATTAGCAATTAAAGTAATGGGTTCTTTCTTGTATAATAAAAATACCACCCAATGGAAAGATACCTTGAAAGGATTAGAGAAGAATCCGAATAGTGAAATTCTGAAAGTTCTCAGGTCAAGTTTCAAGAGACTTGAGAGAAGAGAGAAAGAAATATTTTTGCATATTGCTTGTTTCTTTGATGGGGAGAGGGAGGATTATGTGAGGCGAGTTCTAGATGCTTTTGGATTGCAACATGATATTGGAATTTCACTAATTGCTAAGAAATCATTCATAACCATTCAAAATAAGAAAATTTATATGCATAAAATGTTTCAAGAGTTGGGGAAAAAAATTATTCGGGAACAACATCCTAATGAGCCAAGACTATGGAGTAGATTGTGGCTTTATTGTGATCTCCATGATGCGATTATAAAATCGGAAGCAATATGTGCTAAAGCCATAATTCTAAATCAAAAGGAGGATGTTAGCAAATTCAAACAGTTGAGGGATGAAGATTTAGCAAAAATGAAGAACTTGAAAGTGCTCATATTAAATCATACAAAATTTTCAGGAAGCTCCAAATTTCTTTCCAATTCCCTACGCTATCTTTTGTGGAATGGTTGTCCTATGGCGTATTTGCCATCAAATTTTCAACCATATAACCTTGTAGAATTGAATATGCCTAATGGTAGCATTGTACAACTATGGGAAGACATCCAGGAACTCCCCTTTTTGAAAAGGATGGATATCAGCAACTCCAAAAATCTAAAGGTCACTCCAAGGTTTGAAGGGATGCAATATCTCGAGAGGCTAGATCTTACAGGATGCATAAATTTGTCGGAGGTGCATCCATCAATTGGACTTCTGGAAAAACTTGAATTCTTGAGTTTGCAGAACTGTACTAGTCTAGTTAACCTTGATTTTGGAAATGCAGCTAGATTATGGTCTTTAAAAGTTTTGCGTCTCTCTGATTGCAAGAAACTTGAAAACACTCCGAATTTCAGTGGATTGATTTTTCTACAATATCTTGATATGGGCCGATGTGCAAGTATATCCACGATTCATGAATCTATCGGGACTCTTGAAAACCTCAGATTCATAAGTTTGAGAGACTGCACAGATCTTGTTGAAATACCTGCACAATTATTGAGATCTCTTACAACTCTAGATCTTTGTGGATGCTCTAAATTCAATAAGCTGTCATTGAGACATATTTCCACTTCTCAATCTCTGCAATCTTTGATTTTTCTAGACTTAAGTTTTTGCAATATTGTTAAAGTACCTGATGCTATTGGAGAATTTAGGTGTTTAGAAAGACTAAATCTTCAGGGAAATAACTTTACTGAACTACCCTCCACTTTCGGTGGACTTGACAATCTATCATATTTAAACTTGTCTCATTGTCATAAGCTTCAAAGTTTGTCTTATCTCCTACCAGCAAGATCTAGTTCAGTGGGAAGATATTTTAAAACAACACCTGGAACCCGTAATCATAGATCAGGATTATATATTTTTGATTCTCCCAATTACAAGAAGCATGTATCCTTCTATGACTACGAATATTATTTCGGTTGGTTATTCACTCGCTGGGTAAAAAGACTAGTTATGAAACCTCTTCACTTTCGATGTGGCTTTGACATTGTTCTTCCTTTGCATGGAGATCATACCACTGATTGTGATGTAAATCTTGCCATTCCAAGGTATTTCCGTCACCGGTATAATGGGAGTTCAATAGCAAGGATGACTGTTCCTGTTCTGGATGTCGACTGGCTCGGCTTTCTCTTTTATGTGACATTTGATTTAAATAATCATAATCAGCAATCGTCATCTTCACAACTGCCACATCCATTTTATCTTTCTTTTGAGAGTGAATTCAAAGAAGAACGATTTGATATGGCACTTAATTTGGAACTAAACAAGGTTGATGGAGAACATTACATTTGGATGATCTATATATCTCAGGAACATTGTCATTTTGTAAAAACAGGAGCACACATCACATTTAAAGCCCGCCAAGGTTTGATTATCAAGGAATGGGGGTTGCGTCTCATAACCAAGAAAGACACACAGGGCTCAATGATGGAAATGAGTGTACCAGTACATCTTCCTTTAGAGAATGTGAAAGTAAAACAAAGAAGCGACAGCAGTAGCTTTGAGCCCAAAATCCAACTTCCTTACAATTGGTTTGTTTCTGACAAAGATGAAGCCAATGGAAAAGAAACCGATCTCTTTAATCTTGGCCTTTCAACCGAAATACCACAGTGA	3489	0.3649	MDSNSSSTNSDMSASCSSFQPSSDPNLLDLGSCSIRSNRYRYDVFISFRGSDTRNGFVGHLYGHLVRKGLIVFKDDIELRRGEYIAPQLLQAIKDSRVSIVVFSKDYASSTWCLDEMTAIDECRAELRQTVFPIFYDVDPSHVRKQNGVYENAFVVHTESFKHEPHRVDGWKKAMTYLAGLGGTDVRNKPEFDMIETIVQDVTNTLNPKLSGCYDHLIGVRPRVEALERLLNLKSEDNAFRVLGIRGMDGIGKTTLANVLYDTIAYQFSACCFIENLSTIYRDGDAIAVKKQILHQTLKEKNLDAYNLSEISKILKNRLYNMKVLIVLDDVDQFEQLDELHIDPKLLHPGSRIIITTRDVHILELYGANIIHEVELMNDYDARELLCRKAFKNGNSSNDYAELISNVLRYAQGLPLAIKVMGSFLYNKNTTQWKDTLKGLEKNPNSEILKVLRSSFKRLERREKEIFLHIACFFDGEREDYVRRVLDAFGLQHDIGISLIAKKSFITIQNKKIYMHKMFQELGKKIIREQHPNEPRLWSRLWLYCDLHDAIIKSEAICAKAIILNQKEDVSKFKQLRDEDLAKMKNLKVLILNHTKFSGSSKFLSNSLRYLLWNGCPMAYLPSNFQPYNLVELNMPNGSIVQLWEDIQELPFLKRMDISNSKNLKVTPRFEGMQYLERLDLTGCINLSEVHPSIGLLEKLEFLSLQNCTSLVNLDFGNAARLWSLKVLRLSDCKKLENTPNFSGLIFLQYLDMGRCASISTIHESIGTLENLRFISLRDCTDLVEIPAQLLRSLTTLDLCGCSKFNKLSLRHISTSQSLQSLIFLDLSFCNIVKVPDAIGEFRCLERLNLQGNNFTELPSTFGGLDNLSYLNLSHCHKLQSLSYLLPARSSSVGRYFKTTPGTRNHRSGLYIFDSPNYKKHVSFYDYEYYFGWLFTRWVKRLVMKPLHFRCGFDIVLPLHGDHTTDCDVNLAIPRYFRHRYNGSSIARMTVPVLDVDWLGFLFYVTFDLNNHNQQSSSSQLPHPFYLSFESEFKEERFDMALNLELNKVDGEHYIWMIYISQEHCHFVKTGAHITFKARQGLIIKEWGLRLITKKDTQGSMMEMSVPVHLPLENVKVKQRSDSSSFEPKIQLPYNWFVSDKDEANGKETDLFNLGLSTEIPQ*	1163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1913	1162	Gene3D	-	209	370	IPR027417	-
	Tpr6g1913	1162	PRINTS	Disease resistance protein signature	242	257	-	-
	Tpr6g1913	1162	PRINTS	Disease resistance protein signature	318	332	-	-
	Tpr6g1913	1162	PRINTS	Disease resistance protein signature	411	425	-	-
	Tpr6g1913	1162	PRINTS	Disease resistance protein signature	817	833	-	-
	Tpr6g1913	1162	Pfam	TIR domain	42	211	IPR000157	GO:0007165
	Tpr6g1913	1162	Pfam	NB-ARC domain	230	448	IPR002182	GO:0043531
	Tpr6g1913	1162	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	35	739	-	-
	Tpr6g1913	1162	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	35	739	IPR044974	GO:0006952
	Tpr6g1913	1162	Gene3D	-	39	208	IPR035897	-
	Tpr6g1913	1162	SUPERFAMILY	L domain-like	528	886	-	-
	Tpr6g1913	1162	Gene3D	Ribonuclease Inhibitor	756	893	IPR032675	-
	Tpr6g1913	1162	Pfam	Leucine rich repeat	825	877	IPR001611	GO:0005515
	Tpr6g1913	1162	SUPERFAMILY	Toll/Interleukin receptor TIR domain	34	181	IPR035897	-
	Tpr6g1913	1162	Gene3D	-	377	460	IPR042197	-
	Tpr6g1913	1162	ProSiteProfiles	TIR domain profile.	40	206	IPR000157	GO:0007165
	Tpr6g1913	1162	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	470	IPR027417	-
	Tpr6g1913	1162	Gene3D	Ribonuclease Inhibitor	565	746	IPR032675	-
	Tpr6g1913	1162	SMART	till_3	41	181	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1913	Tpr-Chr6	20727467	20739078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1913	720	880	WRKY Transcription Factor Family	AT4G12020	31.288	3.23e-09	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1913	-		-	mtr:MTR_7g069120	1266.91