Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1908 ATGAACCGTTCAGCCGCCACGTTGTTCATCATCGTCGCTACGTTGTGTTTCGTTTTAGAATTCGAAACCAAAACAATCGACCCCTATAAGGTTCTTGGGGTTGATAAAACTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCACAAACTCTCTCTTCAATATCACCCTGACAAGAACAAGGCCAAAGGTGCACAAGAGAAGTTTGCTCAGATAAATAATGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGACTTATATGGAGATGAGAAAGGAAATCCTGGATTTGAAGCTGGCCACCCTGGAGGTAGCGGCTTTAACTTCAGACCAGGCGAACAATGGAGTAGCGGTGGCCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGCAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCTGGGCCCAAGAGTTCCCCCAAAAGTTTTAAAGCCATAAATTCAAATATCTACAAGAAAGAAATTGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATACACCCTCATTGAGGGGCGTCCAACAGTTTGAGTCCACTATAGGGGAGGTTTCCAGTACATTGCAAGGAGCTTTGAAGGTTGGAAGCATAAACTGTGAAAAGGAAGTCTCATTATGTAAGGAGCTTGGTATATATCCTCGCAAAGCTCCAAGGATTTTTGTCTATTCTTACAAGGAGAATGAAAAGGGTTCTCTGGTGGAGTACGGTGGTAACTTGGCTGTTAAGGATTTGAAGGCTTTCTGTCAACAACACTTGCCAGGATTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTTAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTCTCTTCCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGTAAACGCATTACTTTCGGTGATGTAGAGGTTCATGATTCTGATTTGAGAGTGGAAAAACTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAGAGTATTCTGAAAACAGGGGTTTCTGTGAAAGATGTAAAATCTGGTGTACAAGATCTTAGTAACATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGCACAAACTGATTCAGAAGACGGATACATTCAGTTGCTTTCTCGGTCAAACTTCGAGGATCTCTGTGGGGCAAAAACTCCAGTTTGCATAATTGGTGCCTTTAGATCTTTGAAAGCAAGGGAAGAGCTAGAATATATTCTCTCTTTGGTCTCACATATGTCATTGTCAAGAAAACCAAATGGAGGCGGCAGCTCTAGGGACTCCATTTCCTATGCTCTCTTAGACTCTGCACAGCAACAATCCTTTCTAAACGCATTTGACAAAATGGGTTATAAATCATCAGATAAGTTGTTGATTGCCTACAAACCTCGGAAAGGGAAATTCGCTGTATTTATGGGTGATATGAGAATAGAGAAGGTAGAGAATTTTATCGGCTCCGTTCTAAGCGGAGATATACCCTTTAGGGAAACACATAAGAAGCCTGTACTAAAATAG 1650 0.4091 MNRSAATLFIIVATLCFVLEFETKTIDPYKVLGVDKTASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGSGFNFRPGEQWSSGGQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSGPKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYTPSLRGVQQFESTIGEVSSTLQGALKVGSINCEKEVSLCKELGIYPRKAPRIFVYSYKENEKGSLVEYGGNLAVKDLKAFCQQHLPGFSKRIDLNQLDQFSTTGKLPRVLLLSSKKNTPVIWRVLSGLYRKRITFGDVEVHDSDLRVEKLGVDALPAIVGWLPNGEKSILKTGVSVKDVKSGVQDLSNILDSFEKVSKKETSSQSKKAQTDSEDGYIQLLSRSNFEDLCGAKTPVCIIGAFRSLKAREELEYILSLVSHMSLSRKPNGGGSSRDSISYALLDSAQQQSFLNAFDKMGYKSSDKLLIAYKPRKGKFAVFMGDMRIEKVENFIGSVLSGDIPFRETHKKPVLK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1908 549 Coils Coil 61 81 - -
Tpr6g1908 549 PANTHER DNAJ PROTEIN ERDJ3A 7 549 - -
Tpr6g1908 549 SUPERFAMILY Chaperone J-domain 24 117 IPR036869 -
Tpr6g1908 549 PANTHER DNAJ PROTEIN ERDJ3A 7 549 - -
Tpr6g1908 549 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Tpr6g1908 549 Pfam DnaJ domain 27 88 IPR001623 -
Tpr6g1908 549 SUPERFAMILY Thioredoxin-like 175 285 IPR036249 -
Tpr6g1908 549 CDD DnaJ 27 80 IPR001623 -
Tpr6g1908 549 PRINTS DnaJ domain signature 29 47 IPR001623 -
Tpr6g1908 549 PRINTS DnaJ domain signature 47 62 IPR001623 -
Tpr6g1908 549 PRINTS DnaJ domain signature 63 83 IPR001623 -
Tpr6g1908 549 PRINTS DnaJ domain signature 83 102 IPR001623 -
Tpr6g1908 549 SMART dnaj_3 26 83 IPR001623 -
Tpr6g1908 549 Gene3D DnaJ domain 25 161 IPR036869 -
Tpr6g1908 549 ProSiteProfiles dnaJ domain profile. 27 91 IPR001623 -
Tpr6g1908 549 Gene3D Glutaredoxin 174 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1908 Tpr-Chr6 20660194 20663776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1908 29 90 C2H2 Transcription Factor Family AT1G74250 42.647 2.58e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1908 - - gmx:100796871 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1908 6 20660194 20663776 Tpr6g1908 6 20660194 20663776 ECH