Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1899 ATGGAGTGCTACAACAACACTTTCTCTTATTCTTCAGGGTCATCTTCAAAAACAAAGGAGAAAAAGGAAAAGGGTGTGAAAAAAATCAAAACCAAAAGATCATCGGTGAAACTTTCAACTGATCCACAAAGTATTGCAGCTAGAGAAAGAAGGCATAGAATCAGTGACAGGTTTAAGATTCTTCAGAGTATGGTTCCTGGTGGGAATAAATTGGATACTGTTTCTATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGCTTCATCAAACAATGATTAACTTTGTTGATGATATTGATGAGTCATCATCACATATGTTGCTTCCTCAAGATAATTATTATTCACCAAATGATAACATTATTCAGCATAGCACTTTTGGTTCAGTTGAGTCTATGCAGAATTTGCCACAGTTACCACCAGATCAGTTCTGTTTTCAAGGTGATCAAGATACCAAAACCATGTTTAATATCACTATGAAATATTAA 501 0.3393 MECYNNTFSYSSGSSSKTKEKKEKGVKKIKTKRSSVKLSTDPQSIAARERRHRISDRFKILQSMVPGGNKLDTVSMLEEAIHYVKFLKTQILLHQTMINFVDDIDESSSHMLLPQDNYYSPNDNIIQHSTFGSVESMQNLPQLPPDQFCFQGDQDTKTMFNITMKY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1899 166 Gene3D - 31 96 IPR036638 GO:0046983
Tpr6g1899 166 SMART finulus 44 93 IPR011598 GO:0046983
Tpr6g1899 166 MobiDBLite consensus disorder prediction 1 15 - -
Tpr6g1899 166 MobiDBLite consensus disorder prediction 1 47 - -
Tpr6g1899 166 Pfam Helix-loop-helix DNA-binding domain 46 87 IPR011598 GO:0046983
Tpr6g1899 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 96 IPR036638 GO:0046983
Tpr6g1899 166 CDD bHLH_AtIND_like 39 98 - -
Tpr6g1899 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Tpr6g1899 166 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 155 IPR045843 GO:0003700|GO:0006355
Tpr6g1899 166 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 17 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1899 Tpr-Chr6 20573077 20573774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1899 30 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 59.677 1.17e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1899 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1899 - - gmx:113002129 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1899 6 20573077 20573774 Tpr6g1899 6 20573077 20573774 ECH