Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1896 ATGGATATGAGGAAGGAAGAAACATGTGGCTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAAAATGGTTGCGAAATTAGTGAAGCAAATGAAGATGAAGAAAGTAAGCAAAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAGAAGAAACCATCAGTGAGACCTTATGTTAGATCCAAGTTTCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTGAGTATTGCTCATGTGAAGAGTCATTTGCAGATGTATAGAAGCAAGAAAGTAGTTGACACAAATAAAGTGCTGGGTGATCATAGGCTTCTTGTAGACAATGGAGACAAAAATGTTTATAATCTCACCCAACTTCCTATGCTTCAAGGCTATACTCCAAACCAAACTTCATCAAATAGATGTGGATATGGAGATGATTCTATTGCTATGTATGAAAACATGGTGCATATGAGTTCAATAAATGAATCTAGAGCTGATTTCTATGGAAGAATGATTGAGAGAACCAATAATAACAACATCAATAATATGGAAGTTCATAATATTTTTCAAGTGAATTCTTCAAATTTTAGAGAATTATCAACAAGTAAAGTCCATGAACCAAATGATAATTTCCTCTCATTTTGTGGCAATGAATCTTTTAGATTGAGCAAGAAGGATGATCAGCCTAGAGAACAAGAGCTCATGCCTAATGATAATCAAGTGGACTTGAAAACATTGAAAAGAAAAGCTTCAAATATGGACCTTGATTTGGATCTATCACTTAAATTAAATTCAAGGATCATTGGTGATGATCATAAGAACCAAGGAATTATAGAGGATCATCATGAAGTTGGAAGCAATTTATCTCTCTCATTGTATTCTCAATCTTCTTATAATCTTTGCAAAAGAAAGAAAGAAGGACAAGATGATTCTAAGGAGCAAGAGAAAAGAGTGAATATAGGTTTGGATCTAACCATATGA 1065 0.3399 MDMRKEETCGSICSKTSVSINENGCEISEANEDEESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNKVLGDHRLLVDNGDKNVYNLTQLPMLQGYTPNQTSSNRCGYGDDSIAMYENMVHMSSINESRADFYGRMIERTNNNNINNMEVHNIFQVNSSNFRELSTSKVHEPNDNFLSFCGNESFRLSKKDDQPREQELMPNDNQVDLKTLKRKASNMDLDLDLSLKLNSRIIGDDHKNQGIIEDHHEVGSNLSLSLYSQSSYNLCKRKKEGQDDSKEQEKRVNIGLDLTI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1896 354 PANTHER - 10 354 - -
Tpr6g1896 354 Gene3D - 70 126 - -
Tpr6g1896 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 126 IPR017930 -
Tpr6g1896 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 354 IPR044848 GO:0003700
Tpr6g1896 354 MobiDBLite consensus disorder prediction 24 62 - -
Tpr6g1896 354 SUPERFAMILY Homeodomain-like 70 124 IPR009057 -
Tpr6g1896 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 70 125 IPR006447 GO:0003677
Tpr6g1896 354 MobiDBLite consensus disorder prediction 37 54 - -
Tpr6g1896 354 Pfam Myb-like DNA-binding domain 72 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1896 Tpr-Chr6 20539203 20541585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1896 61 126 G2-like Transcription Factor Family AT2G42660 78.788 8.57e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g1896 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1896 - - cam:101498576 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1896 6 20539203 20541585 Tpr6g1896 6 20539203 20541585 ECH