Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1892 ATGAATCAGCAAGAAATTCTTCACTCTCCATGGCCATTAACTTATGCACAAATAGACTCATCAATCTTTGATAATCATCATCAAACCATGGTACATCTTGGTCACTATGATCCATATGGCATCATCATGGATGACCATGTTGATGATTATGGTTCATATGGCATGATCATGGATGATGATCATGTTGATGTTGACTATGTTCCATATGGCATCATCATGGATGACCATGTTGATGATTATGAATTCAATACTCTACTAAGTACTTCAGAGAATAGTAATCTCTCAGAAATTTCTATGTTCACCAATGATCATGTCCAATTTCCAATTGATGAATCAGAAATCTTGGAACTTTCATCACTCATGGAATTAGAATCTTTTGATTCAATTTCATGTCCTCAAATTGTTGATATTCATGAATATGAATACCAAGAAGAAAGCGAAGGGAGCTTCCCTTCACAAAATTTTCCCTGTAACCTCGAGGAACAAAGTTCAAATCTCATCAGAGACAGTTGCGAAATGAACATTGGTACTACTACTACTACTATAACTAATGATAATTTCGCGTCACAAAATTTCCAATATGATTCATGGAGTCCAACACAGTCAATGAAATCAGATTTTTCCTCAATTCAACAATCACTTATTCTTCCCCAACAAAACATGGAAATTGAAAATCAAGTGAGTCTTCCACACTTGATGGAAGCACATGGAGAAGCTTTAGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTTACTCCAATGGGTGATTCTCTTGAAACACTTGCATTTTATTTGTCTCAAGAGGTTACAAATCATGGTGAATATCTCAAAGGCGAGGCTCAAAAGAACTTCGATTCTTCTTTCAAAGCACTCTATCAAGGGAATTTAGTTGGAAAAGTTGCTCATTTTGCAGCTATTTCAGCAATTCTTGAGACTGCTATGTTAGAAGATTGTGATGAAATCCACATAATTGATTTTTGTATTGGAAATGGTGTTCAATGGCCTTCTTTATTGGAGTCTGCTTCAAGAATAAACAAAAGATTGAAATTGACATCAATTAAATCGAGTCACGATGGAAATTCTGAATGTGTTTGGAATTTTGAGGATACTAAAAGGGAACTCTGTGAGTATGCGAAATCATGTGGTTTGAACTTGATGGTAGATGAAAAGGAATTGGAGGAATTGGTTAGTGAGATCAAAATAATGAACAAACGCGGTGCAAGGAAAGTGTTTTTAGCCTTTAATTTGATGACTGGTCTTCCTCATATGGGAATGGTAAGAAACAGAAGAAAAAATGCTTTGGAATTTTTGAAAGTAGCTGAGGATTTGATCAAGAATTGTGGAAGCAAGGGAATGATTACTTTTGGCGATGGCGATGTATTTGAGAAACTGAAAAACAGTTTAAATTTTAAGTCATTTTTTGAAGGGAATTTGGTGCATTATAAGTCTTTGTTGGAATCAATTGAATCACAATTTTCAGAAAGATTCTCAAAAGCAAGAATTGCATGTGAAGTGCTTTTTGTTGCACCTTGTATATCTTCTTGTGATTGGTTACAAACATGGGAAGAGATGAAAAATGATGGTGATTTTCAAGCTGAGATTAGCTTAGAAAGTGGAAGTTTGAGCAAAAATGTTTTGATGGAAGTTAAAGAAGTGTTGAGAGAGTGTGAAAGTTCTTATCAAGCTAGAATTGAAGGAGGAAATGAGAATGAACTTGTTGTGGAATGGAAAGGAACTCAATTATTAAGATTTTCCATTTGGAAAAACTAA 1794 0.3462 MNQQEILHSPWPLTYAQIDSSIFDNHHQTMVHLGHYDPYGIIMDDHVDDYGSYGMIMDDDHVDVDYVPYGIIMDDHVDDYEFNTLLSTSENSNLSEISMFTNDHVQFPIDESEILELSSLMELESFDSISCPQIVDIHEYEYQEESEGSFPSQNFPCNLEEQSSNLIRDSCEMNIGTTTTTITNDNFASQNFQYDSWSPTQSMKSDFSSIQQSLILPQQNMEIENQVSLPHLMEAHGEALEKGQKALAEVNLKCISQKVTPMGDSLETLAFYLSQEVTNHGEYLKGEAQKNFDSSFKALYQGNLVGKVAHFAAISAILETAMLEDCDEIHIIDFCIGNGVQWPSLLESASRINKRLKLTSIKSSHDGNSECVWNFEDTKRELCEYAKSCGLNLMVDEKELEELVSEIKIMNKRGARKVFLAFNLMTGLPHMGMVRNRRKNALEFLKVAEDLIKNCGSKGMITFGDGDVFEKLKNSLNFKSFFEGNLVHYKSLLESIESQFSERFSKARIACEVLFVAPCISSCDWLQTWEEMKNDGDFQAEISLESGSLSKNVLMEVKEVLRECESSYQARIEGGNENELVVEWKGTQLLRFSIWKN* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1892 597 Pfam GRAS domain family 235 596 IPR005202 -
Tpr6g1892 597 ProSiteProfiles GRAS family profile. 220 596 IPR005202 -
Tpr6g1892 597 Coils Coil 393 413 - -
Tpr6g1892 597 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 50 596 - -
Tpr6g1892 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 596 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1892 Tpr-Chr6 20496601 20498622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1892 248 512 GRAS Transcription Factor Family AT5G66770 25.540 2.64e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr6g1892 GRAS 1.4e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1892 - - mtr:MTR_7g069740 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1892 6 20496601 20498622 Tpr6g1892 6 20496601 20498622 ECH