Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1873 ATGCTTGTTACTATTTTCTTCATCTTTCTGTTCTGTTTCCATCCCGTCGTTTCTCTCACCTCCGACGGCCTCGCTCTTCTAACACTCAAATCCGCCGTCGACGGAGACGCCGAAGCCGCATTCACTGATTGGAACGAAGACGACAATACGCCGTGTCATTGGTCCGGCATTAGCTGTGCTAACATCTCCGGCGAGTCAGACTCTCGTGTCGTAGGTATTGCTCTCGCCGGAAAAGGCCTCCGTGGTTATCTCCCGTCGGAGCTCGGAAAATTAATCTATCTCCGTCGTCTCAGTCTTCATACTAATCTCTTCCACGGTTCCATTCCCGTTCAGCTCTTCAATGCCACCTCTCTCCACAGTATCTTCCTCCACGGTAACAACCTCTCCGGTAACATTTCTCCGTCAATTTGCAACCTTCCACGCCTACAAAACGTTGACCTCTCTGAAAATTCACTCGCCGGAGTTATCCCGGAGTCTCTCGGAAACTGTTCCCAGCTTCAACGACTCATTCTCGCGAGAAATAATTTTTCCGGTGATATTCCGGTGACTCCATGGCCGAAGCTGAAAAACCTCGTTCAGCTCGACCTTTCCGATAATCTTCTAAAAGGTTCGATTCCAGACCAAATCGGCGATCTCAATTCCCTCACCGGAACCCTAAATCTCTCATTCAATCACCTATCAGGTAAAGTCCCGAAATCTCTAGGAAAATTGCCGGTAACGGTTAGCTTCGATCTTCGAAACAACGATCTAAGCGGCGAAATTCCTCAAACCGGGTCGTTTTCAAATCAGGGACCTACCGCTTTTCTCAATAACCCGAAATTATGTGGGTTTCCTCTTCAAAAACAGTGCACCGGTTCAGCACCAAGTGAACCGGGAACTAGTCCCGGTTTAGCTCGACCGCATGTAAACCGGTCTAAGAAAGGGTTGAGTCCCGGTTTAATTATTATTATAACTGTGGCTGATGCTGCTGTTGTGGCTTTGATTGGGCTTGTTGTTGTGTATGTGTATTGGAAGAAGAAAGATAAGTCTAATGGGTGTAGTTGTACTTTGAAGAGGAAATTTGGTGGTAGTGGAAACAATGAGAGATCAAATTTGTGTTGTTTTTGTTGGTCATTAGGGTGTGTGAAAGGGTTTAAGAGTGATGATTCTGAGATGGAAGAGAGTGAGAAAGGAGGAGGAGGAGGTGGTGGTGCTGGTGGTGGTGGGAGAGGGGAAAGTGAAGGTGAAGGTGAATTGGTGGCAATTGATAAAGGTTTTAGCTTTGAACTTGATGAGTTGTTAAGAGCTTCTGCATATGTGTTAGGGAAAAGTGGGTTAGGGATTGTGTATAAGGTTGTGCTTGGGAATGGTGTACCTGTTGCTGTGAGGAGATTAGGGGAAGGTGGTGAACAAAGGTATAAGGAATTTGCTGCTGAAGTTCAAGCAATTGGGAAAGTGAAACATCCTAATATTGTTAAGTTAAGAGCTTATTATTGGGCTCATGATGAAAAGCTTTTGATTAGTGATTTCATCTCCAATGGCAATTTGGCTAATGCTCTTAGAGGAAGAAATGGCCAACCATCTCCTAATCTTTCATGGTCAACCAGGCTGAAAATAGCCAAAGGAACAGCCAGGGGTTTAGCTTATCTCCATGAATGCAGTCCGAGAAAATTTGTTCACGGCGACCTCAAACCTTCCAATATCCTCCTTGACACAGACTTCCAACCTCTCATTTCTGATTTTGGTCTTAACCGGCTGATCAGTATCACCGGAAATAATCCCTCCACCGGTGGTTTTATGGGTGGAGCTCTTCCTTACTTGAAATCATCACAAACCGAACGAATCAACAACTATAAAGCACCTGAAGCTAAAGTACCAGGCTGCAGACCTACCCAAAAATGGGATGTGTATTCATTTGGTGTTGTATTACTTGAATTGCTCACTGGTAAGTCCCCGGATTCTTCTCCAGGAGCATCAACTTCTATGGAAGTGCCTGATTTGGTAAGGTGGGTAAAGAAAGGGTTTGAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTTCTTCAAGAAATCCATGCTAAGAAAGAAGTACTAGCTGTGTTCCATGTAGCACTATCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAACTGTCTCTGACAATCTTGAAAGAATTTGA 2172 0.4494 MLVTIFFIFLFCFHPVVSLTSDGLALLTLKSAVDGDAEAAFTDWNEDDNTPCHWSGISCANISGESDSRVVGIALAGKGLRGYLPSELGKLIYLRRLSLHTNLFHGSIPVQLFNATSLHSIFLHGNNLSGNISPSICNLPRLQNVDLSENSLAGVIPESLGNCSQLQRLILARNNFSGDIPVTPWPKLKNLVQLDLSDNLLKGSIPDQIGDLNSLTGTLNLSFNHLSGKVPKSLGKLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPKLCGFPLQKQCTGSAPSEPGTSPGLARPHVNRSKKGLSPGLIIIITVADAAVVALIGLVVVYVYWKKKDKSNGCSCTLKRKFGGSGNNERSNLCCFCWSLGCVKGFKSDDSEMEESEKGGGGGGGAGGGGRGESEGEGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSPNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDLKPSNILLDTDFQPLISDFGLNRLISITGNNPSTGGFMGGALPYLKSSQTERINNYKAPEAKVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSMEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSDNLERI* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1873 723 Gene3D Transferase(Phosphotransferase) domain 1 504 723 - -
Tpr6g1873 723 Gene3D Ribonuclease Inhibitor 21 183 IPR032675 -
Tpr6g1873 723 Pfam Protein kinase domain 433 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1873 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Tpr6g1873 723 ProSiteProfiles Protein kinase domain profile. 428 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1873 723 Gene3D Phosphorylase Kinase; domain 1 411 503 - -
Tpr6g1873 723 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Tpr6g1873 723 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Tpr6g1873 723 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 723 - -
Tpr6g1873 723 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 723 - -
Tpr6g1873 723 SUPERFAMILY L domain-like 21 280 - -
Tpr6g1873 723 CDD STKc_IRAK 434 723 - -
Tpr6g1873 723 SUPERFAMILY Protein kinase-like (PK-like) 433 720 IPR011009 -
Tpr6g1873 723 SMART serkin_6 432 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1873 Tpr-Chr6 20224755 20230189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1873 15 723 Receptor kinase-like Gene Family AT1G67510 69.517 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tpr6g1873 Pkinase 2.8e-31 CL0016
TF S1Fa-like Tpr6g1873 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1873 - - gmx:100795021 1128.24