Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1871 ATGAATCTAGATGTGCATTGGGAAAATACAAGAATCAGCCAGAAAACATATTGTTCAATAAAAGCTAGCTGCAAACAAGAACACCAAATAGAGACAAAAAAGCGTATGAAGATTGATACCGTTACTGGAGAAAGGAAATCGCGCAAGAGACGCAGTGGTGGAAGAAGTGATTCAGTGGAAGACACTCTTGAGAAGTGGAAGAACTACAACAAACAGCAACAACAAAAGCTTGGTTGTGGAGATAATGGAGCAGAAAAGATTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGTAAACATGTTGGTGAGAAAGCACATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAGTGCTCGTTTGAATTTTCCTAATGGATCACCATCACCATCATCAAGTGGTGGTTCTGCAGATTCTTTGAACGGCGAGGAGGATCTTGCAAAAGTTGAAGAGTTGGAGGGTAATCTTCATCAGTCTGATGAAGAGAATAAGATTCTTTCTAAAAATTTTGTTGCTGATGATGACTCGGTAGAGGAATCGGAGGAAGTGATGATAGTTGGCACTGCCCAATGTCAAGCTAATAAGAAATGTAAGAAAATGGTTCATCAAGAGTCTTACAAGAATGTTAAGTCTGAAAAACCCGTGGAAAGCGAACGACTAGAGAGTAAATCAGAGAACGTTTTGGAAAATTCTGGCATAGGTGAGTGCTACCATGTGCAGAAGGAGCCTATAGATTCATCCATAAACTCGGGAGCTGCTTGTAGACCTTCTGATATAGCAGAAAATGGGATTTTGGTGAAGAATGGAGAAACAATAAGAGGATCGGGGGAGGATTTGAAATCCTTTGAGATGAGCTGCAACAATAATTTCTTTGGAAACCTGCACAATATTCTTCCAGATAGCAATCAAAGACCAGATTCTGAGTATTTTAACATAAAAACCGAGGCTTCTCTAGCGAAGAAACATAAGAAGGAAGTAATTGGACATTTCTTAAGCCATGCTCAGTCACAAAATGAGCAAAATAAAAATGGAGGTTTTGGTGAGATGAAAAGTGAGCTTAAGGGATTGGAATTCAAGCTGAGAGGCCAATCTACTGATTGTAAGAGTGATGAAGCACAAATAGTACCTTACATGCAGGGAATTCATCTGTCTGATGGTGGCACTGTTGGAGCAATTGAAAGCATATCCCAAGTTGAAGCTTTGAACAACAATACTAATAAAAACACTAAATTAAAAGAGAGAGGAAATAATGGATGTGCACTGCATGGATTAAGTTCAGGGCAAAGTAGGAAGCTGAGTGATCTTTCTCAGCAGCTGCAAAGATTGGGTGGTTACTTGCCTGAAAATTGGAATAATATGCAGTTTGCAGATCTTGAAGTTGGTTATGATTATAGTTTCTTAAAACCTGATTATGATTTTGGTTTATTAGAAGAGAAGAAGTTACTAGATATATGTTTTTCACATATAGGATCTTGA 1632 0.3915 MNLDVHWENTRISQKTYCSIKASCKQEHQIETKKRMKIDTVTGERKSRKRRSGGRSDSVEDTLEKWKNYNKQQQQKLGCGDNGAEKIHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKAHRLWLGTFSTAHEAALAYDKAAKAMYGPSARLNFPNGSPSPSSSGGSADSLNGEEDLAKVEELEGNLHQSDEENKILSKNFVADDDSVEESEEVMIVGTAQCQANKKCKKMVHQESYKNVKSEKPVESERLESKSENVLENSGIGECYHVQKEPIDSSINSGAACRPSDIAENGILVKNGETIRGSGEDLKSFEMSCNNNFFGNLHNILPDSNQRPDSEYFNIKTEASLAKKHKKEVIGHFLSHAQSQNEQNKNGGFGEMKSELKGLEFKLRGQSTDCKSDEAQIVPYMQGIHLSDGGTVGAIESISQVEALNNNTNKNTKLKERGNNGCALHGLSSGQSRKLSDLSQQLQRLGGYLPENWNNMQFADLEVGYDYSFLKPDYDFGLLEEKKLLDICFSHIGS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1871 543 CDD AP2 111 177 IPR001471 GO:0003700|GO:0006355
Tpr6g1871 543 Gene3D AP2/ERF domain 112 177 IPR036955 GO:0003700|GO:0006355
Tpr6g1871 543 ProSiteProfiles AP2/ERF domain profile. 112 176 IPR001471 GO:0003700|GO:0006355
Tpr6g1871 543 Pfam AP2 domain 111 168 IPR001471 GO:0003700|GO:0006355
Tpr6g1871 543 Coils Coil 201 221 - -
Tpr6g1871 543 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Tpr6g1871 543 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Tpr6g1871 543 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 39 413 - -
Tpr6g1871 543 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 413 - -
Tpr6g1871 543 SUPERFAMILY DNA-binding domain 112 176 IPR016177 GO:0003677
Tpr6g1871 543 MobiDBLite consensus disorder prediction 36 61 - -
Tpr6g1871 543 SMART rav1_2 112 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1871 Tpr-Chr6 20208152 20210928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1871 48 189 AP2-EREBP Transcription Factor Family AT2G40340 57.343 6.85e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g1871 AP2 9.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1871 - - cam:101505842 699.893