Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1870 ATGGGCAAGAAACAGAAGTCGCAGCAGATTCTTCTTCCGCCGGACCTCCCACCGGAGATTCCTGACGAAGAAGTTGAGTTTTCCGACGACGACGTTAAATTCGTCAACGAAAATCGCGCCTATGCTTCTTTGCTTTCTAACTTGGACACTCAATCAATCACCAAGCATGTTACACGGGTTGCTGATGCCAAAGAAGATGCTTTGGAGAAACTATATGAGCAACGCAGGCAAAAGACTGCTCTCAAGAAAGAAAAAGAAGAAACAGGTTTGCAGGTTGATCGAGTAGATGCTCTTCCAGTCAAGACATTAGATGGAAAAGTCTATTATCGAACAGCTACGAAGACGGCACCAGTAAATGCTCCAAGTGAAGAGGAAACTGGAGAGGATGGCAACGAAGACATGGGTTTAGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATTAGAAAAGAGGGAAAAAAACAAGGGAAAGAGGTGGCTAAAGAGGAACTGGAAGAAGTACCACAGGCAGCAGTTTTGGCTGCGGTTAAAGAAGATCTTAAAGTTGAAGAGGATTTTGAAAGTAAAAAGTGTAAACTTGCAGAGTTCGGAAATGCCTTGCTAACAGATCCAGAGTCCAATATTAAATTTCTGAAGGAAATGGTACAGATATCTAAAGACAATGATGACACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAGAGATATTATACCTGGCTATCGAATCAGGCTTCCTACTGAAAAGGAACAAGAAATGAAGGTTTCAAAGACTGTTAAAAAGATGCGTTTTTATGAATCAACTCTCCTCTCTGCATACAAGACTTACTTGCAAAGGTTGATAGCCTTAGAAAAGAAGCCTTTATTTCAGCTTGTCGCAGTTCGTTGTATTTGTTCTTTGCTTGATTCAAATCCCCATTTCAACTTTCGTGAAACCTTGTTGGATGCGACTATCAGAAACATAAGCTCCAGTAATGAGACCATAAGGCAACTTTGCTGTTCAACAATTAAGTCACTGTTTACAAATGAGGGTAAACATGGTGGTGAAGCTACTGTGGAGGCTGTGCGGTTGATTTCTTATAAGGTTAAAGATCATAATTGCCAGTTGCACCCTGATTCCATTGAGGTCTTCTTGTCTCTTTCATTTGATGAGGATCTTGCAAAGGCTGAAAAGATGGATAAGGATCAGAAATTTAAAAACAAGAAAGGTAAGAAAAGAAAAAACGCGGAGGCATCAAATCAGTTGCCGGAAAATGACAGAAAGAAAAGTAGGCAAGACTCGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGAATACAAGGCTGCTTCCTTTACCAAGGATGCTATGGAGAAGAGACAGATGCAAACACAAACACTCTCTGCTGTGTTTGAGACGTACTTTCGCATTTTGAAGCATACAATGCAGTCCATAGTTGCCAGGCCTGAAGCAAACCCTGGGGTACTTTCAGCTACAGTTGGAGTGGAACCCCACCCATTGCTAGATCCATGTCTTAAGGGATTGGCGAAATTTTCGCACCTGATTGACCTTGATTTCTTGGGTGATCTAATGAACCATTTGAAAATACTTGCTTCTGGAGGTAGCAAATCAGGCAACACATCTGAGATTTTTCCTAAAAGTCTGACCGTATCTGAACGCCTCCAATGTTGCATCGTTGCTTTTAAAGTGATGCGAACCAATCTTGATGCCTTGAATGTTGATTTACAAGACTTCACTGTCCATCTTTACAATCTTGTACTTGAATACAGGCCTGGAAGGGATCAAGGAGAGGTGTTAGCAGAAGCTTTGAAGATCATGTTGTGTGACGATAGGCAGCATGACATGCAAAAAGCGGCTGCTTTTATAAAACGTTTGGCTACATTGTCACTGTGCGTTGGATCTGCAGATACCATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCTGAAGAATCTCAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGTTCTGTTTCTGGCACAATTCCGAAATATCTACCATATTCGACAGATCCTAATTTAAGTGGCGCCCTTGCCTCAGTGCTTTGGGAAGTTTGTCTTTTGTCCAAACACTATCATCCAACCATATCAGCAATGGCAACAGGCATTTCAAGCATGAGCACTGAAAACCAAGTCTTCCTCTCCAAGTCGTCTCCTCAACAAGCTTTCAAGGACATGTCTATTGACCAAGAACTATGTTTTGAACAAAGTGGTAGTATTAAATTAAATAACAAGAAGAGACGATTGACCAATGCTACATCAAATTCCATTGGTTCCACAACAGTAACGAGTTCATTCAATGAAGATGACTTGCGAAAGAAATTTAGTTCCCATTTTATGGTTCTTCATGATATCAAGGAGAACGAAAAGTTGAGAAGTAAGTTGGATAAGACTGCAAAATCACTTCAGCTATTTGAACAATATAAGGAACAAAAGAAGAAACGATCAAAACCTAGTAGTTGA 2505 0.4088 MGKKQKSQQILLPPDLPPEIPDEEVEFSDDDVKFVNENRAYASLLSNLDTQSITKHVTRVADAKEDALEKLYEQRRQKTALKKEKEETGLQVDRVDALPVKTLDGKVYYRTATKTAPVNAPSEEETGEDGNEDMGLVKLTKAEKRAKLKKIRKEGKKQGKEVAKEELEEVPQAAVLAAVKEDLKVEEDFESKKCKLAEFGNALLTDPESNIKFLKEMVQISKDNDDTIVKLGLLSLLAVFRDIIPGYRIRLPTEKEQEMKVSKTVKKMRFYESTLLSAYKTYLQRLIALEKKPLFQLVAVRCICSLLDSNPHFNFRETLLDATIRNISSSNETIRQLCCSTIKSLFTNEGKHGGEATVEAVRLISYKVKDHNCQLHPDSIEVFLSLSFDEDLAKAEKMDKDQKFKNKKGKKRKNAEASNQLPENDRKKSRQDSISKTREEVEAEYKAASFTKDAMEKRQMQTQTLSAVFETYFRILKHTMQSIVARPEANPGVLSATVGVEPHPLLDPCLKGLAKFSHLIDLDFLGDLMNHLKILASGGSKSGNTSEIFPKSLTVSERLQCCIVAFKVMRTNLDALNVDLQDFTVHLYNLVLEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATLSLCVGSADTMAALVTVKHLLLKNLKCRNLLENDTGGGSVSGTIPKYLPYSTDPNLSGALASVLWEVCLLSKHYHPTISAMATGISSMSTENQVFLSKSSPQQAFKDMSIDQELCFEQSGSIKLNNKKRRLTNATSNSIGSTTVTSSFNEDDLRKKFSSHFMVLHDIKENEKLRSKLDKTAKSLQLFEQYKEQKKKRSKPSS* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1870 834 SUPERFAMILY ARM repeat 184 391 IPR016024 -
Tpr6g1870 834 MobiDBLite consensus disorder prediction 399 440 - -
Tpr6g1870 834 Coils Coil 438 458 - -
Tpr6g1870 834 Coils Coil 64 88 - -
Tpr6g1870 834 PIRSF Noc3 1 813 IPR016903 -
Tpr6g1870 834 Pfam Nucleolar complex-associated protein 192 282 IPR011501 -
Tpr6g1870 834 Pfam CBF/Mak21 family 559 714 IPR005612 -
Tpr6g1870 834 MobiDBLite consensus disorder prediction 413 440 - -
Tpr6g1870 834 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 763 IPR016903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1870 Tpr-Chr6 20191766 20202267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1870 1 809 Core DNA Replication Machinery Family AT1G79150 56.951 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1870 K14834 - gmx:100776136 1244.57