Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1863 ATGGCAGTCACATTCTATAACCTTAAATCTGAATCTGGTTTGAAGAAGCTCAATGAGTACCTTCTTACACGCAGTTACATCACTGGTTACCAAGCTTCAAAGGATGATATCACTGTCTATTCAGCTTTGCCATCTGTTCCATCAGTTGAATTTGTTAATGTGGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCCGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTTGAATCTTCTCTTGTTGCTGAAGAGGCTGTTGCCACTCCTCCAGCTGCCGACACAAAGGCCACCGAAGCCGAGGATGATGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCCGAGGAACGGGCAGCCGCCGTGAAAGCATCTGGCAAAAAGAAAGAGAGTGGAAAATCATCTGTTTTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCAGTGAGATCTGTTAAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGATACGGTATCAAGAAACTGCAAATCATGCTTACTATTGTTGATGATTTGGTTTCTGTTGACAATATGGTTGAGGATTATCTTACCGTTGAGCCCATCAATGAGTATGTTCAGAGTTGTGACATTGTTGCCTTCAATAAAATATAA 696 0.4296 MAVTFYNLKSESGLKKLNEYLLTRSYITGYQASKDDITVYSALPSVPSVEFVNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEEAVATPPAADTKATEAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1863 231 Gene3D - 3 79 - -
Tpr6g1863 231 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 231 - -
Tpr6g1863 231 Coils Coil 114 134 - -
Tpr6g1863 231 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 1 231 - -
Tpr6g1863 231 Gene3D - 135 231 IPR014717 -
Tpr6g1863 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Tpr6g1863 231 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Tpr6g1863 231 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Tpr6g1863 231 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Tpr6g1863 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Tpr6g1863 231 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Tpr6g1863 231 MobiDBLite consensus disorder prediction 88 108 - -
Tpr6g1863 231 SUPERFAMILY GST C-terminal domain-like 8 67 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1863 Tpr-Chr6 20130433 20132988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1863 5 231 Eukaryotic Initiation Factors Gene Family AT2G18110 82.456 2.67e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1863 K03232 - nnu:104588784 311.227