Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1845 ATGAAAATGTTGTCCACAATGTCAGGCTCAGAATTAGTGAATATTAATATTTTAATTTTGTCATGTTTTTTGGCTTTGAATTGCTTTCTTCAAGAGTTTGGATCCAATGGTCAACTCATTCCACAAGATGAAGTAAAATCACTACAAGCAATATCAGATAAACTAAAGAACGTGCAATGGAAAGTCACAGAACGTTCCTGCGTTGATGATGGAGGCTTCAGTAATGACAATCTTAATACTGAGAATGACATCGTCAGGAATGTCTCATGCAATTGCAATTTCCAAAATAACACCGTTTGTCATGTTACTAGCATATTTCTAAAGGGCCAAAATATAGCTGGAGTTATGCCTAGTGAATTTGGAAACCTTACTCAATTGAAAGTACTTGATCTCTCTCGTAACTATCTCAATGGCTCAATTCCGACGACTTTTGCTAGCAATTCTCTAGTTGTTTTGTCGCTTTCGGGAAACGGATTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTGCTAGCTTGGAGGATCTGGTCTTGGAAAATAATCAACTAGGTGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAAGACACTGCTTCTTTCTTCAAATAATTTTACAGGGATAATACCAGAATCATTTGGCAAACTAAAGAATCTCACTGATTTTACGATAGATGGAAGCAGTTTATCTGGACAGATACCTAGTTTTATTGGGAACTGGACCAAACTTGACAGATTGAATATGCAGGGAACATCTATGGAAGGTCCTATTCCCTCCACCATATCTGAGTTGAAACTTTTGACGGAGTTGAGAATATCTGATTTGACAGGATCAGCTATGACATTTCCTAATCTAAAGGATTTCAAAAACTTGCAACTCTTGGAATTGAGAAATTGCTTAATCACAGGCCCTATTCCTGATTACATTGGTGAAATGGAAAGTTTAGTTACTTTAGATCTAAGCTTCAATATGTTGACCGGTTCAATCCCAAATTCAATTCAGGGCTTAAAAAACCTTGAGTACATGTTTCTGACGAATAACTCTTTAAGTGGACCGATTCAAGACTGGATACTGAACTTCAAAATTAACATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCAACTGGCTGCCAACAGTTGAATCTGAACTTGGCTTCAAGCCAATCGTCTTCATCGGTCACTACACCTTCAACATTTTGTTTGAAGAGGAACCTTCCTTGCGCAGGAAAACCTCAGTATAATTCATTGTTCATAAATTGCGGAGGACCTCAAGAGGATTATGATGGAAATCACTATTTTGGAGATCTGCAAACAGATCGCGTTTCAAATTTTGTTGTTAGAAATGAAGGACAATGGGCTTATAGCAGCACGGGAGTGTATATGGGAATTGTTAACGCAAATTATATGGCATCAAATACATATTCTTTGAATATTAATGGCTCAGAATACTATAATACCGCACGGCTTTCACCTATGTCACTTAAATACTATGGCCTTTGTATGGAGAAGGGAAGTTATAAAGTGAATCTCCATTTTGCTGAGATAATGTTTTCAGACGACAAAACTTTTAGCAGTCTTGGAAGACGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGAAGCTGGTGGAGTTGGAAAGGGCATCACTAAGGAATTTGATGTCGAAGTCAATGACAACACGTTGGAAATTCACTTATACTGGGCAGGGAAAGGAACCAATGCGATTCCTGTCAGAGGTGTATATGGACCTCTTATATCTGCTATCACAGTAACACCAAACTTCAAAAATCATTCAAAAGGGTTGTCTGCTGGAGTTATTGTTGGAATTGTAGCCGCATCATGTATCCTTGTCATATTGATATTGGTTACCCTTTGGAAGATGGGTTTGCTTGGCAGAAAATATGTAAGAGAGAAAGAACTTCTTGATCTCAAAACTGGTTATTTCAGCTTAAGACAAATTAAAATAGCCACTAATGACTTTGACCCTGCAAATAAGATTGGTGAAGGGGGATTTGGACCGGTATACAAGGGTATTCTGTCAGATGGTGATGTCATTGCTGTTAAGCAACTCTCCTCCAAATCACATCAAGGGAACCGTGAATTTGTTAATGAAATCGGAATGATATCTGCTTTACAGCATCCAAATCTTGTTAAGCTCTATGGCTGTTGCATTGAAGGAAAGCAGTTGCTGCTGGTATATGAATACATGGAAAACAATTGTCTTGCGCACGCACTTTTTGGTCGTCCAGAACAGAAGCTGCACTTGGATTGGCATGCAAGAATGAAGATTTGTCTTGGCATAGCAAAGGGATTAGCATTTCTTCATGAAGAATCAGTGTTGAAAATAGTACACAGGGATATTAAGGCTTCTAATGTATTACTTGACAAGGATTTGAATGCCAAAATCTCTGACTTCGGTTTAGCTAAGCTTGATGAAGATGGGAATACCCATATCAGTACACGGATAGCAGGAACAGTTGGATACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAGGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCAATACAAATTTTAATCCAATGGAGGAGTTTTCATATCTTCTGGATTGGGCCTGTGATCTTCAAGAGCAAGGGAACATTTTGGAGTTAGTGGATCCAAGTCTTCTTGGCTCAAGGTACTCCACAAAGGAAACCATGAGAATGCTTAATGTGGCATTCTTATGCACAAACACATCTCCCACTCTTAGGCCATCGATGTCATCGGTAGTGAGCATGCTTGAAGGAAAAACTCCGATCCAAACGACAGTAATCAATCAGAGGGACAGTGGTCAACATGCAAGTCTCAAATCCTCCGAGTTTCTGTCACAAGATAGTCAAACATCAACAAACGGGCCAAGGGTATACTCCTCCGTATCTCTTCTAAGTGAAGACGATTTTTCTTCAAGCAGTTAA 3009 0.3845 MKMLSTMSGSELVNINILILSCFLALNCFLQEFGSNGQLIPQDEVKSLQAISDKLKNVQWKVTERSCVDDGGFSNDNLNTENDIVRNVSCNCNFQNNTVCHVTSIFLKGQNIAGVMPSEFGNLTQLKVLDLSRNYLNGSIPTTFASNSLVVLSLSGNGLSGPIPTEIGDIASLEDLVLENNQLGGPLPPSLGNLSKLKTLLLSSNNFTGIIPESFGKLKNLTDFTIDGSSLSGQIPSFIGNWTKLDRLNMQGTSMEGPIPSTISELKLLTELRISDLTGSAMTFPNLKDFKNLQLLELRNCLITGPIPDYIGEMESLVTLDLSFNMLTGSIPNSIQGLKNLEYMFLTNNSLSGPIQDWILNFKINIDLSYNNFTKSSATGCQQLNLNLASSQSSSSVTTPSTFCLKRNLPCAGKPQYNSLFINCGGPQEDYDGNHYFGDLQTDRVSNFVVRNEGQWAYSSTGVYMGIVNANYMASNTYSLNINGSEYYNTARLSPMSLKYYGLCMEKGSYKVNLHFAEIMFSDDKTFSSLGRRIFDVSIQGFKYLKDFNIMEEAGGVGKGITKEFDVEVNDNTLEIHLYWAGKGTNAIPVRGVYGPLISAITVTPNFKNHSKGLSAGVIVGIVAASCILVILILVTLWKMGLLGRKYVREKELLDLKTGYFSLRQIKIATNDFDPANKIGEGGFGPVYKGILSDGDVIAVKQLSSKSHQGNREFVNEIGMISALQHPNLVKLYGCCIEGKQLLLVYEYMENNCLAHALFGRPEQKLHLDWHARMKICLGIAKGLAFLHEESVLKIVHRDIKASNVLLDKDLNAKISDFGLAKLDEDGNTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNFNPMEEFSYLLDWACDLQEQGNILELVDPSLLGSRYSTKETMRMLNVAFLCTNTSPTLRPSMSSVVSMLEGKTPIQTTVINQRDSGQHASLKSSEFLSQDSQTSTNGPRVYSSVSLLSEDDFSSSS* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1845 1002 SMART LRR_typ_2 314 337 IPR003591 -
Tpr6g1845 1002 SMART LRR_typ_2 123 146 IPR003591 -
Tpr6g1845 1002 SMART LRR_typ_2 194 217 IPR003591 -
Tpr6g1845 1002 Pfam Malectin domain 419 601 IPR021720 -
Tpr6g1845 1002 CDD STKc_IRAK 679 947 - -
Tpr6g1845 1002 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 222 IPR000225 GO:0005515
Tpr6g1845 1002 Gene3D Phosphorylase Kinase; domain 1 642 748 - -
Tpr6g1845 1002 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Tpr6g1845 1002 PANTHER - 80 968 - -
Tpr6g1845 1002 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Tpr6g1845 1002 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Tpr6g1845 1002 ProSiteProfiles Protein kinase domain profile. 673 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1845 1002 Gene3D Ribonuclease Inhibitor 209 274 IPR032675 -
Tpr6g1845 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Tpr6g1845 1002 MobiDBLite consensus disorder prediction 966 987 - -
Tpr6g1845 1002 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 968 - -
Tpr6g1845 1002 Gene3D Transferase(Phosphotransferase) domain 1 749 969 - -
Tpr6g1845 1002 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Tpr6g1845 1002 SUPERFAMILY Protein kinase-like (PK-like) 658 946 IPR011009 -
Tpr6g1845 1002 SUPERFAMILY L domain-like 96 374 - -
Tpr6g1845 1002 Gene3D - 418 607 - -
Tpr6g1845 1002 SMART serkin_6 673 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1845 1002 Pfam Protein tyrosine and serine/threonine kinase 677 944 IPR001245 GO:0004672|GO:0006468
Tpr6g1845 1002 Gene3D Ribonuclease Inhibitor 46 208 IPR032675 -
Tpr6g1845 1002 Gene3D Ribonuclease Inhibitor 276 394 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1845 Tpr-Chr6 19970661 19985503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1845 18 996 Receptor kinase-like Gene Family AT1G53440 59.682 0.0 1148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g1845 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1845 - - gmx:100815226 1427.54