Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1842 ATGAAGATCTCTCAGATCGATGATCCGTATGGTGAGTTTTTAGAACTCATAAAGAATTTCCAAGCGGGAAGAATTGATAGAAGACGTTTCAGAGCAAGAGTGCAGGTATTGTGTAGTGGAAATACAGATTTGATTTTCAGATTCAACACCTTATTGAAAAACAAATATCAAATCAAACTTAAGATCACTGCAGGGGTCAAAAGAAAAAAGGTGAAGAAGAAGAAGGTAGAAGAGAGTCATGAACTTCCTTGGGATATGCTTGATATTATTTGCAAAACACTAGATTTTCACGACCTCTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGGCTTTTCATAAAATTTACTGGACAAATTTCATAGCATACCAAGAACCATTACTTCTCCGAAATGTGTATAGTAATCGAGAATTCTCTTCCTTAATAAGCATTCCCGACCAAAAAATTTATTCCTTGAAGAAGATGGAGTGCTTATTCAACTCTATCTATGTTGAGTCTTCTGGCGGATATTTTATCAAGGCGGCGGACAATAATTCATTTAAGATAATCAATCCATTTACAAGAACAAAGAAGTCTTAG 579 0.3575 MKISQIDDPYGEFLELIKNFQAGRIDRRRFRARVQVLCSGNTDLIFRFNTLLKNKYQIKLKITAGVKRKKVKKKKVEESHELPWDMLDIICKTLDFHDLFQFAGVCKNWRAFHKIYWTNFIAYQEPLLLRNVYSNREFSSLISIPDQKIYSLKKMECLFNSIYVESSGGYFIKAADNNSFKIINPFTRTKKS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1842 192 Gene3D Paired amphipathic helix 2 55 IPR036600 GO:0006355
Tpr6g1842 192 Pfam F-box domain 81 111 IPR001810 GO:0005515
Tpr6g1842 192 SUPERFAMILY PAH2 domain 8 56 IPR036600 GO:0006355
Tpr6g1842 192 SUPERFAMILY F-box domain 81 112 IPR036047 GO:0005515
Tpr6g1842 192 ProSiteProfiles F-box domain profile. 76 120 IPR001810 GO:0005515
Tpr6g1842 192 PANTHER OS06G0113600 PROTEIN 72 191 - -
Tpr6g1842 192 Pfam Paired amphipathic helix repeat 8 51 IPR003822 GO:0006355
Tpr6g1842 192 PANTHER OS06G0113600 PROTEIN 72 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1842 Tpr-Chr6 19942474 19946333 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr6g1842 PAH 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1842 - K11644 cam:101488742 173.711