Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1841 ATGAAGATCTCTCAGATCGATGATCCGTATGGTGAGTTTTTAGAACTCATAAAGAATTTCCAAGCGGGAAGAATTGATAGAAGACGTTTCAGAGCAAGAGTGCAGGTATTGTGTAGTGGAAATACAGATTTGATTTTCAGATTCAACACCTTATTGAAAAACAAATATCAAATCAAACTTAAGATCACTGGGGTCAAACGAAAATATGTGAAGAAGAAGAAGAAGAAGAAGGTAGAAGAAAACCGTGAACTTCCTTGGGATGTTCTTGATAACATTTGCAAAACACTAGATTTTCACGACCTCTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAAGGCTTTTCATAAAATTTACTGGACAAATTTCATAGCATACCAAGAACCATTACTTCTCCGAAATGTGTATAGTAATACGCATCTTCAAGAATTCTTTTCCTTAATAAGCATTCCCAATCAAAAAATTTATTCCTTGAAGAAGATGGAGTGCTTATCCAACTCTATGTATGTCGCGTCTTCTAGCGGATATTTTATCAAGGCGGGATTCAATGATTCATTTCAGATATTCAATCCATTTACAAGAACAAAGAAGGTAATCAATGCCTCTAACTTTGAAGTTATCTCTAATGCTTTTGCTAGCCATGCATTGCTTGCTCTTAGCAAATGCTCCGAGGATTTTGTTTTGGTGGTTTTATGCACATGCTCTAGGAATTTGCGTGTCTATCAATCTAGAAACTATGGTTGGGTTAGTTATTCTTCAGCAATAGGAAATCAAGAAGAGAAGATTGTTCACTTTGTGGTTTTGCACAGTATAATATACCTTGTCACTAACAAGGCCAACATAGGAGTGCTTAGCTTGAATTCTACAAACATTAAATTTCTAAAACTGAAGAGTACTCCTGATGTAACTAGCATACACCTTAAGCTGGTTAATTGTGATGAACAACTTTTACTGGTTGATTTAATGGAAGATAAAATGATTAGGAATGTGTACAAGATAGACTTCTCCACCATGAATTATGTCAAACTTGAAACTTTGGGGGATATTGCATTATTTTATGCTTGTAATGGTTTGAAGAAAGATTGTTATGCATTGAGCAACCCGAACAAGTGGGGATATGAGAGAAACTCTGTGTATGTCACCCTCTTTTCATCTACAATATGTAGAGTGTATTCATGGGATGATAAAAAATTGCAAAAATGCATTATGCTTCCAACTCCCGATGAAACAGGTGTCTTCGTGTTTGACTGGTGTTTTAGACATCTACAATACGAGATAGATTATTCTCTAGTTGAGTAA 1296 0.3557 MKISQIDDPYGEFLELIKNFQAGRIDRRRFRARVQVLCSGNTDLIFRFNTLLKNKYQIKLKITGVKRKYVKKKKKKKVEENRELPWDVLDNICKTLDFHDLFQFAGVCKNWKAFHKIYWTNFIAYQEPLLLRNVYSNTHLQEFFSLISIPNQKIYSLKKMECLSNSMYVASSSGYFIKAGFNDSFQIFNPFTRTKKVINASNFEVISNAFASHALLALSKCSEDFVLVVLCTCSRNLRVYQSRNYGWVSYSSAIGNQEEKIVHFVVLHSIIYLVTNKANIGVLSLNSTNIKFLKLKSTPDVTSIHLKLVNCDEQLLLVDLMEDKMIRNVYKIDFSTMNYVKLETLGDIALFYACNGLKKDCYALSNPNKWGYERNSVYVTLFSSTICRVYSWDDKKLQKCIMLPTPDETGVFVFDWCFRHLQYEIDYSLVE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1841 431 PANTHER OS06G0113600 PROTEIN 69 426 - -
Tpr6g1841 431 Pfam Paired amphipathic helix repeat 8 51 IPR003822 GO:0006355
Tpr6g1841 431 Gene3D Paired amphipathic helix 2 55 IPR036600 GO:0006355
Tpr6g1841 431 SUPERFAMILY PAH2 domain 8 56 IPR036600 GO:0006355
Tpr6g1841 431 SUPERFAMILY F-box domain 83 130 IPR036047 GO:0005515
Tpr6g1841 431 PANTHER OS06G0113600 PROTEIN 69 426 - -
Tpr6g1841 431 Pfam F-box domain 83 112 IPR001810 GO:0005515
Tpr6g1841 431 ProSiteProfiles F-box domain profile. 78 122 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1841 Tpr-Chr6 19930377 19953929 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr6g1841 PAH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1841 - - cam:101488742 441.039